Hi,
You can try the SSM from the pdbe tools, also described in Krissinel and Henrick (2004), Acta D63, 366-380. It worked for us nicely on a similar problem of a dimeric structure.
Cheers,
Boaz.
Boaz Shaanan, Ph.D.
Department of Life Sciences
Ben Gurion University of the Negev
Beer Sheva
Israe
Dear colleagues,
I have a structure of a simple, common fold (hth, dna-binding) that I believe
has oligomerized in a different way to that observed for any members of the
superfamily that I can reasonably analyze.
So if I run fold comparison analysis (e.g. DALI) it will find similar
structur
Dear all,
I am working with a multi-subunit complex which needs a minimum of
5% glycerol for stability in solution. I usually reconstitute this complex
together with multiple interaction factors as a part of big ensemble over
GraFix for cryoEM grid preparation in a final buffer co
