With the vast number of sequences available I doubt you’ll get any meaningful
results with only 3 amino acids…
However, I believe the full list of sequences in the PDB is available here for
download:
ftp://ftp.rcsb.org/pub/pdb/derived_data/pdb_seqres.txt
Using this you could run your own local s
Dear CCP4BB members,
Sorry this post is off-topic. I am asking is there a way to blast pdb for a
very short sequence like 2 or 3 amino acids? I tried this for a positive
control in pdb database but returned that "Your search parameters were
adjusted to search for a short input sequence." and "No
Dr. Julien’s laboratory at The Hospital for Sick Children Research Institute
(https://lab.research.sickkids.ca/julien/) is looking for a Computational
Biologist to join our Structural Immunology team as a Research Associate. The
successful candidate will participate in the design and engineering
Dear members of the structural biology community,
I am looking for postdoctoral researchers interested to do single particle
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Dear Derek and CCP4bb community,
Sorry for not posting the solution. The issue have got solved with the help
from Felix, Ronan and Jens.
Adding # in front of *locale.setlocale(locale.LC_NUMERIC, "") *(near the
top), in
"/Applications/ccp4-7.0/share/mrbump/include/output/MRBUMP_printTable.py"
wor
Dear Nishant,
Did you ever get an answer to your question? I came across it while looking
through old e-mails. This has happened to me on every Mac I have run MrBUMP on
in recent years (always in Sweden). You need to go to
/Applications/ccp4-7.0/Frameworks/Python.framework/Versions/2.7/lib/pyth
