Re: [ccp4bb] Tris buffer in cryo protectant

2015-06-12 Thread Tristan Croll
Might be worth trying to see if your protein will still crystallize in a mixture of tris and TAPS buffer? The pKa of the latter is very close to tris, but goes in the opposite direction with temperature - a roughly 3:2 TAPS:tris mix should have minimal pH change on freezing. Tristan Croll L

Re: [ccp4bb] handling crystals in volatile solvents

2015-06-12 Thread Tanner, John J.
This paper might be helpful. 1. J Struct Biol. 2014 Nov;188(2):102-6. doi: 10.1016/j.jsb.2014.09.011. Epub 2014 Oct 5. Efficient cryoprotection of macromolecular crystals using vapor diffusion of volatile alcohols. Farley C, Juers DH. Author information: (1)Department of Physics, Whitman Colle

[ccp4bb] handling crystals in volatile solvents

2015-06-12 Thread Thomas, Leonard M.
Hi All, We have gotten some very nicely formed crystals out of a couple of different volatile solvents recently. Besides looking for something easier to work in does anybody have any tips on handling crystals from these types of solvents. It is very hard to loop a crystal while it is doing th

[ccp4bb] Tris buffer in cryo protectant

2015-06-12 Thread Ursula Schulze-Gahmen
Does anyone have experience with Tris buffer in cryo protectants? I would expect the pH of the cryosolution to increase a lot during flash freezing which could perhaps destroy the diffraction. I rarely use Tris for crystallization but the current protein really prefers Tris. I would appreciate any

[ccp4bb] refinement restraints for C-terminal amide

2015-06-12 Thread wtempel
Hello, how does one specify C-terminal amidation of a peptide for REFMAC refinement? I intended to prepare link restraints between the C-terminal amino acid residue and a residue "NH2". But JLIGAND reports "Code 'NH2' does not exist in the library". On my system, $CLIB/data/monomers/n/NH2.cif exist

[ccp4bb] Feeling molecular?

2015-06-12 Thread Curry, Stephen
In case it’s of interest (for pub discussions of structural biology, explaining yourself to your parents, or perhaps teaching…), I thought I’d point people to a couple of pieces on the Guardian Science blog this week about the problem of seeing yourself as a molecular entity: This is my take o