Re: [ccp4bb] Bogged by blobs

2015-05-07 Thread A M Saeed
Dear Artem, Thank you for your help. And I will use the hyperlink option next time. Cheers On May 7, 2015 10:08 PM, "Artem Evdokimov" wrote: > Blobs 3, 5, and 7 are likely poorly modeled or alternative sidechains. The > rest - hard to say from static imagery. > > Artem > > P.S. the etiquette of

Re: [ccp4bb] Bogged by blobs

2015-05-07 Thread Artem Evdokimov
Blobs 3, 5, and 7 are likely poorly modeled or alternative sidechains. The rest - hard to say from static imagery. Artem P.S. the etiquette of the board is that large attachments are not nice to people who read stuff on portable devices or over slow connections. It is considerably nicer to use hy

[ccp4bb] Off topic - Curves_plus server?

2015-05-07 Thread Ekaterina Morgunova
Does anyone know if Curves_plus server is moved somewhere? http://gbio-pbil.ibcp.fr/cgi/Curves_plus/ - This webpage is not available Best, Katja. Ekaterina Morgunova, PhD Karolinska Institutet Department of Biosciences & Nutrition Sy

Re: [ccp4bb] XDS INP

2015-05-07 Thread Graeme Winter
Dear All, Starting from here I would just use the generate_XDS.INP script developed by Kay Diederichs: http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_XDS.INP It will make the necessary input files from just the image headers. best wishes Graeme On Thu, May 7, 2015 at 11:34

[ccp4bb] Postdoctoral position in Structural Biology at the CNIO, Madrid, Spain

2015-05-07 Thread Daniel Lietha
*A fully funded 3-year post-doctoral position is available at the Structural Biology and Biocomputing Programme of the Spanish National Cancer Research Centre (CNIO) in Madrid, Spain.* We are seeking a motivated scientist to join our group to study molecular mechanisms of cell signaling and adhesi

Re: [ccp4bb] XDS INP

2015-05-07 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Lu, according to the file ending (mccd) in the def-file, you collected data with a MAR CCD detector. The template file XDS-MARCCD.INP handles those. The pixel size, etc. are taken automatically from the frame headers. This detector type is also s

Re: [ccp4bb] XDS INP

2015-05-07 Thread luzuok
Dear Fred, Actually I'm not very sure the detector type is MX300. The site file of HKL2000 is in the folder called MX300. I guess the detector is MX300 because there are another folder call PILATUS6M. In the def.site, I can see {dectec} {CCD unsupported-m300}. And there seems no m300 dec

[ccp4bb] Fwd: [ccp4bb] XDS INP

2015-05-07 Thread Fulvio Saccoccia, Sapienza
Dear Lu you can freely download the tutorial from here: http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Main_Page You can check if your detector is supported here: http://xds.mpimf-heidelberg.mpg.de/html_doc/detectors.htm Best Fulvio > Il giorno 07/mag/2015, alle ore 10:33, luzu

Re: [ccp4bb] XDS INP

2015-05-07 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Lu zuokun, the web site http://homes.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/detectors.html lists all the detectors supported by XDS. There are some graphical user interfaces for XDS which are very good not only for beginners. One I can r

[ccp4bb] XDS INP

2015-05-07 Thread luzuok
Dear all, I'm a XDS beginner and the first problem I encounter was the INP file. The detector type is MX300. Is the detector supported by XDS? How to modified the INP file? The sitefile of HKL2000 was attached. Can anyone provide some tutorial to use XDS? Best wishes! Lu zuokun