Re: [ccp4bb] dimeric region

2015-04-30 Thread Roger Dodd
Hi Rohit, A nice tool I came across recently, other than PISA, was EPPIC: http://eppic-web.org/ewui/ . This tool analyses the interface in a similar way to PISA, looking at size and gives a per-residue percentage buried surface area. It also does an evolutionary analysis to determine how conserve

[ccp4bb] dimeric region

2015-04-30 Thread rohit kumar
Hello everyone, Can any one tell me the list of on line tool to calculate the dimeric area of protein structure and it gives all the possible residues involve in dimeric region. Other then PISA -- WITH REGARDS Rohit Kumar Singh

[ccp4bb] Post-doc position in serial crystallography

2015-04-30 Thread Joerg Standfuss
Dear all, A post-doc opportunity is available at the Paul Scherrer Institute in Switzerland. We are looking for a young scientist with interest in serial crystallographic data evaluation and processing. Within an interdisciplinary team you will strengthen our efforts in time-resolved crystallograp

[ccp4bb] Clear project history

2015-04-30 Thread Chen Zhao
Hi all, Sorry for this small technical question. Would anyone tell me a simple way to clear all project history in CCP4? Where is the file recording this history stored? Thank you for your help! Best, Chen

Re: [ccp4bb] Alexander Rich passed away Monday April 27, 2015

2015-04-30 Thread Rosario Recacha
Hola Cele, Que te parece? Yo creo que en este tipo de servicios es un poco triste que se envien estas cosas Besos, Rosario On Thu, Apr 30, 2015 at 5:23 PM, Edward A. Berry wrote: > Some details of one controversy Prof. Rich became embroiled in are > available > on the wikipedia page for

Re: [ccp4bb] Alexander Rich passed away Monday April 27, 2015

2015-04-30 Thread Edward A. Berry
Some details of one controversy Prof. Rich became embroiled in are available on the wikipedia page for his colleague Sung-Hou Kim (http://en.wikipedia.org/wiki/Kim_Sung-Hou). Especially references 6-8, which are scanned copies of correspondence exchanged with the folks at MRC, e.g. the initial a

Re: [ccp4bb] Alexander Rich passed away Monday April 27, 2015

2015-04-30 Thread Robert Sweet
I am really sorry to hear this. May his soul rest in peace. With great respect and affection for Alex, I doubt seriously if he will rest in peace. My memory of him as a beamline user was that he was demanding and difficult to satisfy, but in the end grateful for the effort we exerted, and he

[ccp4bb] Who is citing me now?

2015-04-30 Thread Sameer Velankar
Dear all, Have you ever wondered how many times your structures are mentioned in the literature, even when your paper isn't cited (or when your structure hasn't been published)? You can now find out easily on the redesigned and improved PDBe website. We not only list the papers that have cited

Re: [ccp4bb] Reading coords and maps in COOT for PDB entries in mmcif format

2015-04-30 Thread Paul Emsley
Hi Andrew, On 28/04/15 10:35, Andrew Leslie wrote: I am trying to get coordinates and maps into COOT for a PDB entry that is only in mmcif format. If I select any of the "Fetch PDB …" options in COOT, I get the following error message: DEBUG:: in get-url-str: "4wz7" "http://www.ebi.ac.uk/pd