It would be nice though if imosflm did the killing for you - it happens
to me a large fraction of the time on windows. (I imagine windows
doesn't make mosflm's life easy, mind you.)
phx
On 04/02/2015 05:11, Keller, Jacob wrote:
No--but thanks to you I just found it hanging in the process ma
No--but thanks to you I just found it hanging in the process manager and killed
it, which seems to have done the trick. Guess I should have thought of that
sooner...
Thanks for the help,
Jacob
-Original Message-
From: Edward A. Berry [mailto:ber...@upstate.edu]
Sent: Tuesday, February
Is the old mosflm.lp open in an editor?
Some editors will put a lock on the file which would prevent mosflm from
overwriting or renaming it.
On 02/03/2015 11:38 PM, Keller, Jacob wrote:
Dear Crystallographers,
Has anyone come across this message before with imosflm in Win7? I think
restarting
Dear Crystallographers,
Has anyone come across this message before with imosflm in Win7? I think
restarting cures it, but I've got other jobs going...
JPK
***
Jacob Pearson Keller, PhD
Looger Lab/HHMI Janelia Research Campus
19700 Helix Dr, Ashburn, VA 20
Hi Colin,
I understood the jest, of course.
Now I got curious: At 2theta=0, the scattering from H is 1e, so I assume
the the scattering length for its nucleus is 1e/1860 = 0.00054.
According to the data from Phil Coppens web site, the atomic scattering
factor for H reaches this value at sin theta
Dear Bernhard,
For the unplaced model, it can only be a Babinet model to improve the scaling,
This is not fully true, and the flat mask correction can be used as well.
Please look :
Fokine, A. & Urzhumtsev, A.G. (2002) "On the use of low resolution data for
translation search in molecular repl
Dear Crystallographers,
I am trying to get MrBump to complete a partial solution, but on my windows7
machine, the CCP4i interface essentially freezes (cannot see logfiles therein,
nothing responds, although it does not completely die), and those log files
which I think are the correct ones have
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Hi Bernhard,
You're right, it's a Babinet-style correction to the SigmaA curve for the
effect of neglecting bulk solvent in the model. We gave a formula in equation
19 of the main Phaser reference (McCoy et al., 2007), but actually we've
changed the form of this since then. It looks like the
Hi, Colin,
... I've been carrying a (very beaten up) 5'' x 3'' (April 1986) edition of the
LBL ‘X-ray Data Booklet’ around in my briefcase for the past ¼ century or more.
(An invaluable reference work.) So, I’m most pleased to follow the link that
you refer to now, to the online versi
Hi Tim
Although my SHELX comment was in jest, your point illustrates the programs
versatility. You are also right about the flat(ish) form factor for the proton.
To get to a resolution where there is a cross over would require a very short
wavelength. Other processes would then dominate. A nice s
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Hi Fellows,
I cannot find the proper reference for the implementation of bulk solvent
corrections in the
Phaser Molecular replacement likelihood functions. For the unplaced model,
it can only
be a Babinet model to improve the scaling, and I believe that is implemented
via a
Babinet rescaled
Dear Eike,
we have a simple automation exactly for this problem: a pipeline called
DIMPLE. In Diamond it's run automatically after data collection, if the
user provided pdb file.
If you have CCP4 installed try:
dimple file.mtz file.pdb output_dir
The last arg is a directory where you want resul
Dear all,
I am looking for a way to automate molecular replacement and refinement
runs.
>From ligand / fragment screening trials we have many datasets of the same
protein with various resolutions (2.8 – 1.2Å). The apo-structure is known
and well refined. The cell constants are fairly similar b
Hi Chiara,
We also have an Avant at room temperature. My recommendation would be to
forgo using a water bath. Instead you can achieve a prep near enough to 4C
by doing 2 things: Firstly, keep your columns stored in the cold room or a
fridge to pre-chill them before use. Secondly, make your buffers
Hello,
we have an AKTA Avant that we keep at room temperature. We would like to be
able to use it for preps at 4 degrees, so we would like to keep the FPLC
columns (type 10/30 from GE) in the cold. We were thinking of buying a
circulating water bath and connect it somehow to the columns through
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