[ccp4bb]

Hello CCP4 Users, I recently collected data in-house on an Raxis IV and am trying to solve a 3.2 angstrom structure. I have obtained only "partial solutions" using Phaser and would like some help. I believe I only have two molecules in the ASU instead of three as suggested by the mathew's calcula

Re: [ccp4bb] Add an atom in Coot

On Tue, Mar 18, 2014 at 6:59 PM, Remie Fawaz-Touma wrote: > how do you place the pointer if there is no bond there? (just density) I > am trying to connect 2 sugars creating 2 bonds to one oxygen that I have to > add (oxygen does not exist now). > On my Mac, I can change the pointer position by h

[ccp4bb] Add an atom in Coot

Thanks to all who answered. In fact my question is as below: how do you place the pointer if there is no bond there? (just density) I am trying to connect 2 sugars creating 2 bonds to one oxygen that I have to add (oxygen does not exist now). and I got the answer from mjvanra...@cnb.csic.es: "

[ccp4bb] EMBO Workshop Advances in protein-protein analysis and modulation

Dear all, I would like to announce this EMBO work-shop dedicated to protein-protein interactions with a large foccus on structural biology. “Advances in protein-protein analysis and modulation”, 9-12 september 2014 in Hyères, France Application deadline: March 31 2014 Further information abou

Re: [ccp4bb] Add an atom in Coot

Thanks. If I had tried it before asking, it would have been obvious. I was thinking the "pointer" was the mouse pointer, turned into a pink cube to indicate which tool was selected. The pink cube is an object you can move around in three dimensions like an atom. At this rate, I'll be able to wea

Re: [ccp4bb] Refmac buccaneer combination

Hi Ronan and Kavin, I checked the input files and found that i was assigning wrong column labels in buccaneer for which the error was popping up. I was able to fix it now. Thanks a lot. Debajyoti On Tue, 18 Mar 2014 21:09:15 +0530 wrote > Hi Debajyoti, T

Re: [ccp4bb] Add an atom in Coot

You can place the pointer by clicking the central-button of the PC-PS/2 mousse. And you can also turn your model with the left button for that, you place the pointer for example at one place according X-Y plan, you turn by 90 along Y axe, you replace the pointer at the right place and again 90 a

Re: [ccp4bb] Add an atom in Coot

Neat! How do you control the depth (front of slab to back of slab)? FOOS Nicolas wrote: Hi Remi, you place the pointer (pink cube) at the place where you want put the atom. After you click on Place atom at pointer (yellow square with blue cross). HTH Nicolas _

Re: [ccp4bb] Refmac buccaneer combination

Can you send me the rest of the logfile? I think I've seen an error like this where the number of atoms built dropped to zero, in which case there is something seriously wrong with the input phases. But I expect there are other ways to trigger a refmac fail - I can't tell for sure without more inf

Re: [ccp4bb] Add an atom in Coot

Hi Remi, you place the pointer (pink cube) at the place where you want put the atom. After you click on Place atom at pointer (yellow square with blue cross). HTH Nicolas De : CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] de la part de Remie Fawaz-Touma [

[ccp4bb] Add an atom in Coot

Can anyone give directions on how to add an atom in coot?? Thank you very much, Remie

Re: [ccp4bb] AW: [ccp4bb] regarding Fo-Fc map in coot

sorry for the delay. The structure was refined by REFMAC V. v plot is indicating scaling problems. They were not perfectly overlapped. What should we do now? Is there any trick to avoid such scaling problem? best regards amlan On Tue, Mar 11, 2014 at 11:05 PM, Eleanor Dodson wrote: > If yo