Hi Martyn,
Thank you very much for you suggestions, it worked out for me. But, if I
have multiple sequences in alignment, how should I go in that case?
Thanking you in advance
DCB
On Tue, Feb 4, 2014 at 12:14 AM, MARTYN SYMMONS <
martainn_oshioma...@btinternet.com> wrote:
> Hi Dilip
>the n
Hi Napo,
Thank you so much, this is exactly what I was looking for.
Kind Regards,
Grant
From: Napoleao Fonseca Valadares [n...@ifsc.usp.br]
Sent: 04 February 2014 12:18
To: GRANT MILLS
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Vector approximation of B-stran
Hi Grant,
I think pymol's module "AngleBetweenHelices" might be worth checking, at least
for some ideas in the code.
http://www.pymolwiki.org/index.php/AngleBetweenHelices
It has four methods to "fit" the helix, and a couple of them work well with
b-strands.
Have fun.
Regards,
Napo
-
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Dear Annemarie,
This could be a reaction product of the PMSF with either tris or alanine (as
you have
modeled, but yo
Dear all,
I'm wanting to simplify B-strands in a PDB and my idea was to create a vector
which approximates the alpha carbons through the strand. I was thinking I could
use some kind of least squares regression but it gets very complicated when
extended into the 3rd dimension. Is there a simpler
Hi Dilip
the numbering can be given for the top and the bottom sequence only in
ESPRIPT
you enter the command to produce these in the SPECIAL COMMANDS AND
CHARACTERS BOX. You only get this box on the server input page if you select
the ADV version in the header - this is the ADVANCED ver
It looks like a Hepes?
Padayatti
On Mon, Feb 3, 2014 at 8:37 AM, Annemarie Weber <
annemarie.we...@uni-konstanz.de> wrote:
> Dear all,
> I am refining a 1.4 A resolution structure and found some well-defined but
> unfortunately unexplained density. The protein was purified in HEPES buffer
> with
What does anomalous difference Fourier look like?
-Original Message-
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Annemarie
Weber
Sent: Monday, February 03, 2014 11:37 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] unexplained density
Dear all,
I am refining a 1.
Hi,
You probably tried it but what happens if you fit in PMSF and refine?
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
E-mail: bshaa...@bgu.ac.il
Phone: 972-8-647-2220 Skype: boaz.shaanan
Fax: 972-8-647-2992 or 972-8-64
Dear Colleagues,
We are pleased to announce the seventh annual CCP4 crystallographic summer
school at Advanced Photon Source (APS), Argonne National Laboratory (ANL). All
details can be found at
http://www.ccp4.ac.uk/schools/APS-2014/index.php
Title:"CCP4 crystallographic school: From data coll
Hi everyone,
I am facing some troubles with PHASER and with AutoSol (things that did not
happen earlier to me).
I am working with anomalous data and the first thing I do is to run HySS in
order to find the heavy atoms sites. Once this is done I have two options:
run PHASER or run AutoSol.
Phaser
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Thanks everybody for their valuable suggestions..
On 2/3/14, MARTYN SYMMONS wrote:
> Yes, thanks Robbie
> That is just my point - a structure submitted and then validated for paper
> reviewers by the PDB can be changed almost completely after the paper is
> accepted.
> The data can be changed too
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Yes, thanks Robbie
That is just my point - a structure submitted and then validated for paper
reviewers by the PDB can be changed almost completely after the paper is
accepted.
The data can be changed too and only stipulation seems to be that it cannot be
new data i.e. it has to have a date of c
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