I prepared this on Sunday, here it is now:-
Well, I was 'shaken but not stirred' to see a program 'fake_Fobs'. However
James' posting on the Rfactor gap in MX is a more respectable, Sunday morning,
topic. I tried to find the previous threads on this via google and couldn't. So
apologies to all
Hi James,
I guess it depends on what you put in your simulated Fobs. With
phenix.fake_f_obs I can add lots of stuff including H, TLS, small random
rigid-body shifts averaged over ensemble of MD simulated models,
alternative conformations, libration motions of side chains around bonds,
etc.. etc...
Hi Alastair,
since you mentioned it... In our article "On the analysis of residual
density distribution on an absolute scale":
http://www.phenix-online.org/newsletter/CCN_2012_07.pdf
one of the conclusions was that we could not reproduce pronounced features
on the solvent/macromolecule border show
thanks for the reference to the script and additional discussion. I've
looked through the archives a bit but couldn't find an answer to a
question that's been on my mind for a while so my apologies if this
revisits well-trod ground. One of the potential sources of disagreement
contributing to
It is highly advisable to start doing such structures in mmCIF, because soon
this is likely to be the only way to go
Eugene
On 2 Sep 2013, at 09:37, Dirk Kostrewa wrote:
Dear Martyn, Pavel and other interested,
I think, an official extension by the PDB to two characters for the chain names
an
Postdoctoral Research Associate and Research Assistant positions have become
available in the laboratory of Dr. Doryen Bubeck at Imperial College London
starting January 2014. The posts are funded up to 5 years through a Cancer
Research UK Career Establishment Award to Dr. Bubeck. The main objec
On Sun, Sep 08, 2013 at 10:33:31PM -0700, Ezequiel Noguera wrote:
> I'm trying to run edstat, but I can not find it in the list of programs of
> CCP4-6.2 or -6.3. How I can run it under Windows? Thanks
It's been added at some point to Windows build (after 6.3).
It should work, but I don't think t
Hi there,
To my knowledge the PDB does not include unmerged data in entries - you are
required to deposit the data that the coordinates were refined against.
I believe you can deposit other data which will be archived and can be
requested by other users - problem is that none of the distributio
Dear all,
I would like to remind you on a workshop on "The Future of Microfocus Protein
Crystallography" which will take place at the MAX IV User meeting on the 24th
and the 25th of September, 2013, in Lund, Sweden.
Recent developments within protein crystallography methods in combination with
Yes, my understanding too is that they all work at HD resolution, which is
pretty unimpressive if you halve the vertical frequency. But that's what
constitutes a cheap "high-resolution" screen this days. One can only wait and
hope that people get into the 4K monitors, when life will become nic
Hi Alice,
I've got an LG DM2352D-PZ passive stereo monitor, which seems to be comparable
to the Zalman and works under the Zalman setting in coot and ccp4mg on my Mac.
I've been happy with it, at least since I worked out some video settings (very
different from the defaults) that made it easie
Hi Ezequiel ,
It doesn't work on windows as far as I can see from the README file.
ftp://ftp.ccp4.ac.uk/ccp4/6.3.0/unpacked/src/edstats/README
Best regards,
Folmer
2013/9/9 Ezequiel Noguera
> I'm trying to run edstat, but I can not find it in the list of programs of
> CCP4-6.2 or -6.3. How I
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