Re: [ccp4bb] Off-topic, visualization

2013-09-06 Thread Edward A. Berry
That's good to know! Also, molscript seems to clip atoms in an all-or-none fashion depending on the coordinates at the center of the atom- When that point passes through the clipping plane the atom disappears leaving a nub like an amputated limb for the bond. And since the clipping is along Z nor

Re: [ccp4bb] Off-topic, visualization

2013-09-06 Thread Ethan A Merritt
On Thursday, 05 September, 2013 23:17:09 Folmer Fredslund wrote: > If you play around with the settings you can do something similar [in pymol] > http://www-cryst.bioc.cam.ac.uk/members/zbyszek/figures_pymol#cut > > mvh > Folmer For what it's worth, I note that Raster3D differs from most/all of

Re: [ccp4bb] Off-topic, visualization

2013-09-06 Thread Andrew Orry
Arthur, This is straightforward to do in MolSoft's ICM-Browser http://www.molsoft.com/icm_browser.html or iMolview on the iPad / Android http://www.molsoft.com/iMolview.html . See example here http://goo.gl/ZUqHZY 1. Download

[ccp4bb] Postdoctoral Researcher Opportunity in the application of free-electron lasers to structural biology.

2013-09-06 Thread Edward Snell
Postdoctoral Researcher in application of free-electron lasers to structural biology. Open from Sept 2013 until filled. Employer: Hauptman Woodward Medical Research Institute (Position is situated in Germany) Outline of Position: This position is supported by a new NSF grant devoted to the app

[ccp4bb] Song about Crystallography

2013-09-06 Thread Gaudet, Rachelle
Hi CCP4bb folks, This song may have made the rounds before, but I learned about it yesterday and thought that others here might enjoy it: http://montyharper.bandcamp.com/track/what-is-the-shape-of-the-molecule It's a fun song about protein crystallography! My lab got a kick out of it, so I th

[ccp4bb] Fwd: Research Assistant position at the Institut Curie.

2013-09-06 Thread Annemarie Wehenkel
*Please find below a job offer for a research assistant at the Institut Curie in Orsay, France. * An immediate opening for a research assistant (ingénieur d'études) is availablein the Department of"Signalling, Neurobiology and Cancer" at the Institut Curie, Orsay, France, in the Lab of Carsten

Re: [ccp4bb] Off-topic, visualization

2013-09-06 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Arthur Glasfeld, to add to Ethan's comment, you can use molauto to generate an input script for molscript from a PDB-file. Molscript generates the Raster3D format input file where you can easily add the slab. All files are text files and easily