Jaffe's morpheeins might be of interest to you. Here is one paper:
http://www.ncbi.nlm.nih.gov/pubmed/15710608
Sent from Jack's iPad
On Aug 8, 2013, at 7:21 PM, "Shiva Bhowmik" wrote:
> Dear All,
>
> I am looking for references and/or example of substrate or ligand induced
> oligomerizati
FKBP ?
http://www.pnas.org/content/97/13/7096.full.pdf
Jürgen
On Aug 8, 2013, at 8:03 PM, Shiva Bhowmik wrote:
> Dear All,
>
> I am looking for references and/or example of substrate or ligand induced
> oligomerization of enzymes related to activation.
>
> Any help in this regard would be gre
Dear All,
I am looking for references and/or example of substrate or ligand induced
oligomerization of enzymes related to activation.
Any help in this regard would be greatly appreciated.
Thanks.
Shiva
On Thursday, August 08, 2013 01:51:34 pm Omid Haji-Ghassemi wrote:
> Dear Robbie, Marcus and Reginald,
>
> Thanks again for your replies, I truly appreciate the help.
>
> The B-factors was set to 20 when performing TLS refinement so I don't
> think that is the problem.
>
> I also tried Marcus's
Dear Robbie, Marcus and Reginald,
Thanks again for your replies, I truly appreciate the help.
The B-factors was set to 20 when performing TLS refinement so I don't
think that is the problem.
I also tried Marcus's suggestion using output from coot, with no luck.
The only thing left to try is to
Hi Omid,
Sometimes the choice of TLS groups and to a lesser extent the initial B-factor
matter a lot. You should try a few other TLS group selections and see if these
give nicer results. Things to try: TLSMD, including or excluding ligands and
carbohydrates, other common-sense or gut-feeling st
Dear Ethan,
Thank you for your reply.
I will try to review my refinement protocol once more; however, I am still
perplexed at what lies at the heart of the problem.
Overestimation of average B-factor using TLS is perfectly sound, but I am
not sure why all my structures the average increases trem
On Thursday, August 08, 2013 11:39:22 am Omid Haji-Ghassemi wrote:
> Dear all,
>
> I was about to deposit a few structures to the pdb when I noticed the mean
> B-factors were larger than one might expect.
>
> All the structures were refined using TLS refinement.
>
> During refinement in Refmac t
Dear all,
I was about to deposit a few structures to the pdb when I noticed the mean
B-factors were larger than one might expect.
All the structures were refined using TLS refinement.
During refinement in Refmac the average temperature factors for each
structure is reasonable. For example, a str
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Dear Paul,
my email was meant to be provocative but neither insulting nor offensive
(having provoked quite a few responses when I last used the word
'offense' this email does not suffer from a subtle misinterpretation of
mine while not using my mother
Tim,
I'm sure your email was tongue-in-check, but it's provocative nevertheless. I
suspect that Nat's point was that scientific software developers (who are
predominantly scientists of course) are helpful people who want to see their
field of research be successful. If it is possible to spend
On 8/7/13 8:27 PM, Ethan Merritt wrote:
That would be a bug. But it hasn't been true for any version of coot
that I have used. As you say, this is a common thing to do and I am
certain I would have noticed if it didn't work. I just checked that
it isn't true for 0.7.1-pre.
Thanks.
Turns out I
I wanted to thank everyone who responded,
for a whole bunch of advice and suggestions!
Sergei
On 29-Jul-13 12:22 PM, Sergei Strelkov wrote:
Dear all,
In old times I, just like about any protein crystallographer,
used to work on a cluster of SGI/IRIX workstations with complete
NFS-based
cros
I agree with Ed's suggestion - the folks on that forum are very helpful and
very insightful with regards to small-angle scattering.
Some thoughts to offer:
Mark - it's hard to evaluate from the Primus screen shots, simply because
Primus is not rendering the experimental noise. I'd suggesti
Dear All,
a new call for applicants for a PhD fellowship at the Free University of
Bolzano is now out. Please follow the link
http://www.unibz.it/en/public/research/phd/Documents/bando_dottorati_29esimo_ciclo_en.pdf
A suitable candidate will be selected for a position in my group at the
Facul
Apart from editors we also need tools to validate mmCIF files for integrity,
similar to what W3C has for (x)html and css.
I've mostly dealt with mmCIF reflection files so my experience with what can go
wrong is limited. So far, I encountered these 'issues' that may be flagged.
1) Data items giv
Next MX-proposal application deadline: September 1, 2013 is approaching
The Pilatus 6M is operational at BL14.1, which leads to a substantial
performance increase of this station
Single 8h beamtime bookings are now possible
We kindly invite new MX-proposals for beamtime applications for the next
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On 08/07/2013 11:54 PM, Nat Echols wrote:
> PLEASE tell the developers what you need to get your job done; we
> can't read minds.
>
> -Nat
>
Dear Nat,
I have a student working for me until the end of the month. I asked
her to calculate the mean
I hope that some [X]Emacs expert can rewrite Charlie Bond's wonderful pdb-mode
to work with mmCIF files (or at least the coordinate bits)
… for exactly the reasons Phil Jeffrey points out
Phil
On 8 Aug 2013, at 00:54, "Jeffrey, Philip D." wrote:
> Nat Echols wrote:
> > Personally, if I need
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