[ccp4bb] Temperature and crystallization

2012-11-18 Thread Acoot Brett
Dear All, Will you please give a comment on how the temperature influences on the possibility to get protein crystal, and how the temperatures used to get the protein crystals of the same protein influences the protein 3-D structures of the same protein got based on the crystals of the same pro

Re: [ccp4bb] hkl2000 install

2012-11-18 Thread William G. Scott
Make your life easier and use CCP4's imosflm (this is the CCP4 bb after all) On Nov 18, 2012, at 5:48 PM, 王瑞 wrote: > OK,thank you all of you. I have installed one copy of HKL2000 on our > desktop computer. But for my notebook's low 1366*768 resolution, the > HKL2000 can't work ! So what could

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread Pavel Afonine
Hi Jürgen, it should properly take symmetry into account. I would be very surprised if it doesn't. Pavel On Sun, Nov 18, 2012 at 9:14 AM, Bosch, Juergen wrote: > Hi Pavel, > > does this also work for symmetry related atoms ? > > Jürgen > > .. > Jürgen Bosch > Johns Hopkins

Re: [ccp4bb] hkl2000 install

2012-11-18 Thread Felix Frolow
a. What operation system your notebook is running? b. There is no version of HKL2000 for Windows. c. Move to 17" laptop with larger resolution d. You will need special HKL2000 licence for the laptop FF Dr Felix Frolow Professor of Structural Biology and Biotechnology, Department of Molecular Mi

Re: [ccp4bb] hkl2000 install

2012-11-18 Thread Nian Huang
Not sure it is what you need. I put an external screen to my laptop when I use HKL2000 for remote collection. Best, Nian Huang, Ph.D. On Sun, Nov 18, 2012 at 8:48 PM, 王瑞 wrote: > OK,thank you all of you. I have installed one copy of HKL2000 on our > desktop computer. But for my notebook's low

Re: [ccp4bb] hkl2000 install

2012-11-18 Thread 王瑞
OK,thank you all of you. I have installed one copy of HKL2000 on our desktop computer. But for my notebook's low 1366*768 resolution, the HKL2000 can't work ! So what could I do to resolve it ? 2012/11/13 王瑞 : > Dear everyone: > > I have got the returned "cr_info.dat" to /usr/local/lib and > /usr/

Re: [ccp4bb] CCP4BB Digest - 17 Nov 2012 to 18 Nov 2012 (#2012-327)

2012-11-18 Thread Oliver Clarke
I had exactly the same thing happen this year to a 2008 macbook pro. Computer still worked while attached to power but unsurprisingly the battery did not work after that. On Nov 18, 2012, at 7:00 PM, CCP4BB automatic digest system wrote: > There are 8 messages totaling 1223 lines in this issu

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread Ed Pozharski
On 11/17/2012 03:04 PM, Rex Palmer wrote: I would like to specify a target atom in a pdb file and then isolate all atoms within a given distance of the target. The selected atoms are then to be placed in a new pdb file. AWKward BASHing: #! /bin/bash read x y z <<<$(awk '{if(substr($0,1,4)=="A

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread Bernhard C. Lohkamp
Of course (sort of): Extensions->Maps->Export Local Map Fragment B This is nice. Can it do the same for the map? Thanks Jim Brannigan On 18 November 2012 15:52, Bernhard C. Lohkamp wrote: In Coot: Centre on the atom/place of interest. Extensions->Modelling->New Molecule by Sphere then se

Re: [ccp4bb] OT: Has anyone experienced problems with Apple laptop battery expansion?

2012-11-18 Thread Bosch, Juergen
Bill I think that's crap. I had issues on a 2005 MacBook Pro with inflating battery and it was replaced (after about 6 months). There were troubles with those batteries and impurities but mine still had apple care at that time and the batteries were exchangeable. I have not heard of the build in

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread James Stroud
In O, the command is called symm_sphere. http://xray.bmc.uu.se/alwyn/A-Z_of_O/everything_s.html#anchor536668 James On Nov 18, 2012, at 10:14 AM, Bosch, Juergen wrote: > Hi Pavel, > > does this also work for symmetry related atoms ? > > Jürgen > > .. > Jürgen Bosch > Joh

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread Bosch, Juergen
Hi Pavel, does this also work for symmetry related atoms ? Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +

Re: [ccp4bb] Off topic: Selecting atoms within a given distance from a target atom

2012-11-18 Thread Bernhard C. Lohkamp
In Coot: Centre on the atom/place of interest. Extensions->Modelling->New Molecule by Sphere then select the molecule and sphere radius. B I would like to specify a target atom in a pdb file and then isolate all atoms within a given distance of the target. The selected atoms are then to be

Re: [ccp4bb] OT: Has anyone experienced problems with Apple laptop battery expansion?

2012-11-18 Thread Laura Spagnolo
Dear Bill, Yes, the same happened a year ago or so to me, with a 17 inch MacBookPro bought in 2008. The Apple store in Glasgow replaced it for free within roughly one week, and the laptop works well. I agree that this is really dangerous, I wonder if it could also cause the leak of material f