Hi Meindert,
The PDB will let you do what you want and as a result there are a few PDB
entries with crazy residue numbering. I would use insertion codes only for
real insertions or engineered linkers. Like Nat said, they are a nightmare
for many programmers which is why they are poorly supported b
The PDB requires that a single poly peptide have single chain id.
See page 5 of the wwPDB annotation / processing procedures guide
http://www.wwpdb.org/documentation/wwPDB-A-2012May30.pdf
One thing you could do would be to number the second domain
starting a 1170 which would sort-of preserve the
On Tue, Oct 23, 2012 at 9:55 AM, Meindert Lamers
wrote:
> Is there any convention on the numbering of residues in a fusion protein?
>
> I have a structure of two domains fused together but would like to keep the
> biological numbering intact.
> 1st domain: residue 200-300 (protein A).
> 2nd domain
Dear all,
Is there any convention on the numbering of residues in a fusion protein?
I have a structure of two domains fused together but would like to keep
the biological numbering intact.
1st domain: residue 200-300 (protein A).
2nd domain: residue 170-350 (protein B).
The fusion is between A
Dear Rex Palmer,
Get monomer--->LBT->Save coordinate
HTH
Dr. Jayashankar Selvadurai
Hannover
Germany
On Tue, Oct 23, 2012 at 3:17 PM, Rex Palmer wrote:
> Does anyone know if the alpha lactose molecule LBT coordinates are in the
> Coot library. If so how can they be accessed?
>
>
> Rex Pa
Does anyone know if the alpha lactose molecule LBT coordinates are in the Coot
library. If so how can they be accessed?
Rex Palmer
http://www.bbk.ac.uk/biology/our-staff/emeritus-staff
http://rexpalmer2010.homestead.com
Or put all files into pointless..
It will read XDS and do the indexing checks
Eleanor
On 19 Oct 2012, at 12:45, vellieux wrote:
> Well, the first thing I note is that P6(3) is a polar space group.
>
> Hence what I would do myself is the following:
>
> take your crystal 'number 1' (as a referen
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