Re: [ccp4bb] calculating dialectric properties of enzyme active site

2012-10-06 Thread Yarrow Madrona
Thanks Boaz, CCP4mg looks similar to Pymol. Is there any advantage to using it over pymol? I have the used APBS plugin for pymol but I am really looking for just the selection around the active site and found this hard to do using APBS (although I am not very good at using APBS). -Yarrow > ccp4m

[ccp4bb] Postdoctoral Position in Mechanistic & Structural Enzymology at the University of Iowa

2012-10-06 Thread Dey, Mishtu
Postdoctoral Position in Mechanistic & Structural Enzymology at the University of Iowa The Dey lab in the Department of Chemistry at the University of Iowa seeks to recruit a self-motivated postdoctoral researcher with experience in mechanistic and structural enzymology. The successful candidate

Re: [ccp4bb] calculating dialectric properties of enzyme active site

2012-10-06 Thread Boaz Shaanan
Hi If you want to calculate the electrostatic properties of your protein/mutants you can use Delphi or APBS. Calculation of the dielectric constants is most challenging. I think that these two programs use some approximations to estimate the variation of dielectric constants between the outside

[ccp4bb] calculating dialectric properties of enzyme active site

2012-10-06 Thread Yarrow Madrona
Hello CCP4 list readers, Does anyone know how to calculate the dielectric properties of an enzyme active site? I would like to compare the polarity/hydrophobicity of similar proteins and different mutants. Thank you. -- Yarrow Madrona Graduate Student Molecular Biology and Biochemistry Dept.

Re: [ccp4bb] Positions Available

2012-10-06 Thread Chengmin Qian
Sorry Frank, Pls don't be confused, I registered with yahoo mailbox quite a long time ago, I should make my Ad a little bit clearer. Postdoctoral fellow, structural biology in DNA Damage Response, the University of Hong Kong, Hong Kong We currently have the opportunity to recruit a highly-motiva

Re: [ccp4bb] Positions Available

2012-10-06 Thread Frank von Delft
Has Yahoo started a structural biology group? On 06/10/2012 08:18, Chengmin Qian wrote: Postdoctoral Fellow, Structural Biology in DNA Damage Response We currently have the opportunity to recruit a highly-motivated postdoctoral fellow to work on molecular mechanisms of intra-S-phase checkpoin

[ccp4bb] Positions Available

2012-10-06 Thread cmqian
Postdoctoral Fellow, Structural Biology in DNA Damage Response We currently have the opportunity to recruit a highly-motivated postdoctoral fellow to work on molecular mechanisms of intra-S-phase checkpoint activation in response to DNA damage. The candidate should have a strong background in m

[ccp4bb] Positions Available

2012-10-06 Thread Chengmin Qian
Postdoctoral Fellow, Structural Biology in DNA Damage Response We currently have the opportunity to recruit a highly-motivated postdoctoral fellow to work on molecular mechanisms of intra-S-phase checkpoint activation in response to DNA damage. The candidate should have a strong background in