On 07/06/2012 09:40 AM, Andrew Pannifer wrote:
Hi,
Is there a way to ask peakmax to output the volume of each electron
density peak that it detects (or is there a reasonably straightforward
way to do this via an alternative command line runnable approach?)
Cheers,
Alan
There might be a
On 6 Jul 2012, at 15:10, Regina Kettering wrote:
> The model is a theoretical model of Q766C3 (nepenthesin 1), link to the
> download below:
>
> http://swissmodel.expasy.org/?pid=smf02&source=repository&tid=file_model&mid=7d1184184e0086123cd94070ab861eb2_1
>
This is a very silly bug in CCP4MG
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Hi Pavel,
that's probably how I'd program it, too. Still I am not aware of an
existing (command line) program which does that, and I am not sure of
its benefit from a users point of view. I can imagine that many
programs internally make use of the 'bl
Hi Tim,
a possible way of thinking about this is:
say you have N (=nx*ny*nz) nodes of the grid on which you sampled the map,
and the unit cell volume is Vcell, and you are looking at a blob identified
at some level. Then the volume of this blob can be defined as Vblob =
np*Vcell/N, where np is th
Workshop on Advanced Data Collection with Multi-axis Goniometer and
Single-photon Counting Detector
http://indico.psi.ch/multiaxisgonio2012
Swiss Light Source, Paul Scherrer Institut, Switzerland
Nov. 6th - 8th, 2012
This workshop will address aspects including application of multi-axis
goniomet
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Dear Alan,
do you think the notion of 'volume of a peak' makes sense? You are
probably asking for the number of connected pixels around a local
maximum above a certain threshold - again, not sure whether this is a
useful concept and I am not aware of
The model is a theoretical model of Q766C3 (nepenthesin 1), link to the
download below:
http://swissmodel.expasy.org/?pid=smf02&source=repository&tid=file_model&mid=7d1184184e0086123cd94070ab861eb2_1
For the virus problem, it gives me the automatic "You have downloaded a file
from the internet
Hi,
Is there a way to ask peakmax to output the volume of each electron density
peak that it detects (or is there a reasonably straightforward way to do this
via an alternative command line runnable approach?)
Cheers,
Alan
Hope you get this on time, I made a trip to Aberdeen in Scotland and had my
bag stolen from me with my passport,cash and credit cards in it. unfortunately
for me,I have made contact with my bank but they are not providing a fast
solution. I need you to lend me some money to sort my self out of
Dear Mo,
On 6 Jul 2012, at 09:09, Mo Wong wrote:
> Hi,
>
> I can't see any documentation on the CCP4MG web site that shows how to access
> applications using python scripts.
>
> If someone could e-mail me basic script that uses SSM to automatically
> superimpose all loaded PDBs I'd be very gr
Hi,
I can't see any documentation on the CCP4MG web site that shows how to
access applications using python scripts.
If someone could e-mail me basic script that uses SSM to automatically
superimpose all loaded PDBs I'd be very grateful.
Thanks!
Dear Regina,
On 5 Jul 2012, at 17:51, Regina Kettering wrote:
> Dear All;
>
> I have two problems with the visualization program that I am hoping people
> can help me with:
> 1) I downloaded a model from the Swiss-Model repository that I have been
> trying to open on CCP4MG version 2.4.2. I ha
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