Dear Juergen,
That's a practically important approach to recheck the details of structures.
I refined from the structure factor files of two published structures related
to my subject and already found some key information that was missing in the
published ones. So it would be more confident i
Bosch, Juergen wrote:
Dear CCP4 community,
what's the general opinion regarding sharing old published data sets ?
Would you be offended if I asked you for your raw images from say a 5-10 year
old structure ?
And then the more tricky question, what if I find something you overlooked and
I would
Dear CCP4 community,
what's the general opinion regarding sharing old published data sets ?
Would you be offended if I asked you for your raw images from say a 5-10 year
old structure ?
And then the more tricky question, what if I find something you overlooked and
I would perhaps be able to use t
El 02/07/12 21:16, James Stroud escribió:
> The star is usually for sugar atoms, not for the bases. I don't remember what
> curves wants.
>
> Does your PDB have apostrophes instead of stars? If so you should just do a
> global search and replace.
>
> If you still have a problem, you should copy
The star is usually for sugar atoms, not for the bases. I don't remember what
curves wants.
Does your PDB have apostrophes instead of stars? If so you should just do a
global search and replace.
If you still have a problem, you should copy-paste the error message.
James
On Jul 2, 2012, at 12
Hello,
I am trying to analyze an RNA helix with curves+. I keep receiving an
error message that base atom C1* is missing from the pdb. C1 atoms
are certainly all there.
Any advice on how to troubleshoot this will be much appreciated.
Sincerely,
Nikolai Suslov
Hi Alex
Out of the possible issues I suggested earlier I suspect most strongly you
have sizeof(long) != 4.
But Ian is indeed right to promote the canonical answer. Avoid such mess by
using the API ;-)
-- David
On 2 July 2012 15:48, Ian Tickle wrote:
> Hi Alex
>
> Wouldn't you be better off u
Hi Alex
Wouldn't you be better off using the API
(http://www.ccp4.ac.uk/dist/html/C_library/cmaplib_8h.html): that way
your program will have a good chance of still working in another 10
years' time!
Cheers
-- Ian
On 2 July 2012 14:41, Soares, Alexei wrote:
> Hello, Alex here.
>
> Ten years ag
Hi Alex,
The map header is binary, not text, which explains the junk you saw in your
terminal. One thing to be careful of is where the map file came from. The
map format doesn't specify the byte order written to disk, so your reading
routine has to identify whether it was written by a little- or b
Hello, Alex here.
Ten years ago, I read CCP4 maps this way, but it no longer works ... can anyone
tell me why? Note that map1 is an integer so that multiple headers can be
read. Also, supposedly the map header is text, but a simple "head -1" dumps
lots of digital garbage from the map header.
Ooops bad link: http://img.chem.ucl.ac.uk/sgp/medium/monoc.htm
-- Ian
On 2 July 2012 11:49, Ian Tickle wrote:
> Hi James
>
> I would say that you are completely correct in your assessment of the
> situation. The Bilbao server clearly lists only the unique 'standard'
> settings, leaving to the u
Hi James
I would say that you are completely correct in your assessment of the
situation. The Bilbao server clearly lists only the unique 'standard'
settings, leaving to the user the task of rotating the basis to
whatever is required by the unit cell convention, or other criteria
such as isomorph
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