Re: [ccp4bb] unidentified density

2012-02-11 Thread intekhab alam
Thanks to the members for responding to my queries. I would like to summarize the post as: 1.Improve the crystals to have a better dataset. 2. Poly A/G modelling to improve the density and then model the sequence. 3. use of secondary structure prediction tools and docking the sequence accordingly.

[ccp4bb] Error while compiling ccp4 source in mac os

2012-02-11 Thread Rojan Shrestha
Dear all, I would like to compile the CCP4 in mac book pro with intel cpu. The purpose of installing ccp4 using source code is to compile the clipper library. Although I have already installed ccp4 dmg package provided for mac os, I could not compile the clipper using ccp4. The problem occurr

Re: [ccp4bb] Ubuntu Maverick and coot menus

2012-02-11 Thread Folmer Fredslund
Dear David and everybody, lørdag den 11. februar 2012 skrev David Schuller : > On 02/11/12 14:15, Nat Echols wrote: > > On Sat, Feb 11, 2012 at 10:55 AM, hari jayaram wrote: > > There has been a lot of opinions within the Ubuntu community about > Unity..just wondering what coot-ers are using with

Re: [ccp4bb] [COOT] Ubuntu Maverick and coot menus

2012-02-11 Thread David Schuller
On 02/11/12 14:15, Nat Echols wrote: On Sat, Feb 11, 2012 at 10:55 AM, hari jayaram wrote: There has been a lot of opinions within the Ubuntu community about Unity..just wondering what coot-ers are using with the new Ubuntu(s). ... If this is a reliable indication of where Ubuntu is going in t

Re: [ccp4bb] Crystal Structures as Snapshots

2012-02-11 Thread Poul Nissen
Another good lesson here: 2. The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure. Vestergaard B, Sanyal S, Roessle M, Mora L, Buckingham RH, Kastrup JS, Gajhede M, Svergun DI, Ehrenberg M. Mol Cell. 2005 Dec 22;20(6):929-3

Re: [ccp4bb] Crystal Structures as Snapshots

2012-02-11 Thread Joel Sussman
2012_02_11 Dear All, Two really striking examples of "Intrinsically Flexible Proteins" are: (1) Adenylate kinase: Vonrhein, Schlauderer & Schulz (1995) Structure 3, 483 “Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases” http://portal.uni-freiburg.de/str

[ccp4bb] FW: 3-year MRCT-funded postdoc position in structure-based drug discovery in Leicester

2012-02-11 Thread Bayliss, Richard (Dr.)
A position is available in the Department of Biochemistry for a talented postdoctoral structural biologist to work on a new 3 year collaborative project with MRC Technology focussed on protein structure-based drug discovery and development. The scientist will work in the groups of Prof. Mark Car