Re: [ccp4bb] silly question on coot defaults

2011-03-20 Thread Bernhard C. Lohkamp
Section 4.4 Atom Colouring http://lmb.bioch.ox.ac.uk/coot/doc/coot/Atom-Colouring.html i.e. add to your ~/.coot file | (set-colour-map-rotation-on-read-pdb-c-only-flag 1)| Or use the preferences (only in newer pre-release versions): Edit->Preferences->Bonds->Bond Colours tick the box: Ch

Re: [ccp4bb] silly question on coot defaults

2011-03-20 Thread Paul Emsley
On 03/20/2011 09:58 PM, Phoebe Rice wrote: I'm allergic to red nitrogens and blue oxygens, Me too. and I'm tired of changing the default way new files are colored every time I restart coot Yes, me too. I must be missing a way to save the preferred defaults? Section 4.4 Atom Colour

[ccp4bb] silly question on coot defaults

2011-03-20 Thread Phoebe Rice
I'm allergic to red nitrogens and blue oxygens, and I'm tired of changing the default way new files are colored every time I restart coot (I know it save the whole previous session, but sometimes I don't want to see that set of molecules again). I must be missing a way to save the preferred def

Re: [ccp4bb] step refine speed of wincoot

2011-03-20 Thread Bernhard C. Lohkamp
>> Dear all, >> >> I found the step refine speed of wincoot is much slower than that of linux >> coot (with the same pc). Is it normal or I need to configure something with >> the wincoot? >> > There are a number of things that might explain this, for example > > 1) You "linux" system is intrinsi

Re: [ccp4bb] step refine speed of wincoot

2011-03-20 Thread Paul Emsley
On 03/20/2011 01:22 PM, Xiaopeng Hu wrote: > Dear all, > > I found the step refine speed of wincoot is much slower than that of linux > coot (with the same pc). Is it normal or I need to configure something with > the wincoot? > There are a number of things that might explain this, for example

[ccp4bb] step refine speed of wincoot

2011-03-20 Thread Xiaopeng Hu
Dear all, I found the step refine speed of wincoot is much slower than that of linux coot (with the same pc). Is it normal or I need to configure something with the wincoot? best, Xiaopeng Hu

Re: [ccp4bb] Can DM-skeletonisation specify the "join point cutoff" value?

2011-03-20 Thread Tim Gruene
Dear Hailiang, Don't know whether this suits your needs and it does not answer your question, but the program "O" by Alwyn Jones is rather famous for its sophisticated skeletonisation. Maybe it does what you need. Cheers, Tim On Sat, Mar 19, 2011 at 09:42:25PM -0400, Hailiang Zhang wrote: > Hi a