Dear Klaus,
You could make a dot-plot of the sequence against itself. Repeats will show up
as diagonal lines parallel to the main diagonal.
http://emboss.sourceforge.net/apps/cvs/emboss/apps/dotmatcher.html
best wishes
James
--
Dr. James W. Murray
David Phillips Research Fellow
Division on
Dear Klaus,
would the SMART-Server (http://smart.embl-heidelberg.de/) be something you are
looking for? If your repeats are long enough to make up domains it might.
Tim
On Fri, Jun 04, 2010 at 08:15:03PM +, Klaus Sengstack wrote:
> Dear all,
>
> I am looking for an alignment program that i
Hi Hailiang,
My original ISAS program has been incorporated in the SGXPro program
suite (Fu, Rose and Wang, 2005, Acta Cryst. D61, 951) and is currently
used with other phasing programs in SGXPro at SER-CAT. You may find
the description on the use of SGXPro by accessing the SER-CAT website
Dear all,
I am looking for an alignment program that is able to display repeating units
in the sequence. In the C-terminus of my protein I found some specific repeats
which I want to visualize. Does anybody know such program? Thanks a lot.
Best regards,
K.Sengstack
CalAsia Pharmaceuticals is a
San Diego
company specializing in using Structural Biology and novel solution based
screening methods to discover drug candidates. CalAsia has an immediate opening
for a highly motivated Postdoctoral associate. Successful candidates should
have
received a Ph.D.
Hello,
The CIFTr program is a simplied mmCIF to PDB format converter that
can be downloaded at http://sw-tools.pdb.org/apps/CIFTr/index.html.
A more complete conversion, including remarks and other experimental
details, can be performed using the Maxit program. This program can
be downloaded a
Please do not understand my last email as advising against ECC
memory, for various reasons we had to go for a standard Dell
configuration.
Tim has pointed out an error in my email: the two NAS boxes
each have 8TB capacity, not 1TB, but since they are RAIDs we
'see' them as 6TB. I was wondering wh
===
SYNCHROTRON BEAM TIME FOR MACROMOLECULAR CRYSTALLOGRAPHY AT SLS
===
Proposal application deadline: Tuesday, June 15, 2010
Periods:
September 1, 2010 - Dec
Regarding computer hardware choices,
Rather than argue over the necessity of ECC memory, I will simply point
out that motherboards are available for socket LGA1156 which support
ECC, so you can eat your cake and have a choice of frosting too. Both
ASUS and Supermicro offer such boards.
--
==
We recently upgraded our Workstations that we use for both research
and teaching. As a compromise between performance, price and running
temperature we also decided on the Intel Core i7-860 (2.8GHz) which
has four actual CPUs plus hyperthreading. The performance for
programs that actually support
Hi,
I believe there used to be a constraint stopping refined SigmaA values from
going negative, so I'm not sure how this is happening.
The basic problem here is that the correlation between Fo and Fc must be very
close to zero, so that the refined SigmaA values go to zero (or should, in the
ca
David Schuller schrieb:
> On 06/03/10
> 17:08, Edward A. Berry wrote:
>> A colleague is interested in purchasing computers for structural biology.
>>
>> On the CCP4 wiki Kay reports good results with core i7 940 processor
>> in Dell desktops. Is i7 still a good choice? is it worth upgrading now
>>
On Fri, Jun 4, 2010 at 2:28 AM, wrote:
> I was using ccp4-6.0.2. I was using the following scripts:
> sigmaa HKLIN test.mtz HKLOUT test-sigmaa.mtz << eof
> title tt
> labin FP=FP SIGFP=SIGFP FC=FP_atm PHIC=PHIC
> labout DELFWT=DELFWT FWT=FWT WCMB=WCMB
> symmetry P1211
> END
> eof
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