Hi Jack,
just a famous example:
The LIM region of a presumptive Caenorhabditis elegans transcription
factor is an iron-sulfur- and zinc-containing metallodomain.
Li PM, Reichert J, Freyd G, Horvitz HR, Walsh CT.
Proc Natl Acad Sci U S A. 1991 Oct 15;88(20):9210-3.
and
Cysteine-rich LIM domai
Hi all,
I am trying to refine a structure to about 2.0A. Indexing in HKL2000 indicates
the protein crystallized in P2 with unit cell lengths (a1=67.5, b1=58.8,
c1=98.9) and angles (alpha1=90, beta1=101.5, gamma1=90). Molecular replacement
with Phaser yields a solution in P1 21 1 with four mol
Jiamu,
That is a question for pymol-users, not ccp4bb:
http://sourceforge.net/mail/?group_id=4546
Cheers,
Warren
PS. here's one answer:
# create the objects
load $TUT/1hpv.pdb
create side1, chain A
create side2, chain B
dele 1hpv
# splay apart the interface
show surface, side1 within 5
Filip Van Petegem writes:
> While trying to perform some docking experiments with crystal structures into
> cryoEM maps, I found that some deposited EM maps are not at the right size
> relative to crystal structure coordinates (e.g. a ccp4 formatted deposited EM
> map looks smaller than a crystal
Filip Van Petegem wrote:
While trying to perform some docking experiments with crystal structures
into cryoEM maps, I found that some deposited EM maps are not at the
right size relative to crystal structure coordinates. The problem is
independent of the graphics program used (e.g. VMD, chime
