[ccp4bb] structural bioinformatics for dummies

2008-10-21 Thread Radisky, Evette S., Ph.D.
Dear all, Suppose I want to data mine the PDB to find a set of structures containing a motif that is characterized by an unusual conformation of backbone atoms over a short stretch of residues. This structural motif does not correspond to any specific amino acid sequence; the residues could be a

Re: [ccp4bb] warning message will NOT go away

2008-10-21 Thread Eleanor Dodson
That answer is as useful as any! I had to kill, kill kill till it disappeared.. Eleanor [EMAIL PROTECTED] wrote: To quote Terry Pratchett: +++ Divide By Cucumber Error. Please Reinstall Universe And Reboot +++ Couldn't resist :) Artem You have an error in your mtz file.. OK- so I am

Re: [ccp4bb] warning message will NOT go away

2008-10-21 Thread artem
To quote Terry Pratchett: +++ Divide By Cucumber Error. Please Reinstall Universe And Reboot +++ Couldn't resist :) Artem > You have an error in your mtz file.. > > OK- so I am sorry! But the Warning will not disappear.. > Eleanor >

[ccp4bb] postdoctoral positions available in Bethesda Maryland, USA

2008-10-21 Thread Shuishu Wang
Postdoctoral Positions Available in Protein Crystallography Two postdoctoral positions are available at the Department of Biochemistry, Uniformed Services University, Bethesda, Maryland, USA, to perform structural and biochemical research on potential drug target proteins from Mycobacterium tuberc

[ccp4bb] warning message will NOT go away

2008-10-21 Thread Eleanor Dodson
You have an error in your mtz file.. OK- so I am sorry! But the Warning will not disappear.. Eleanor

Re: [ccp4bb] TLS Refinement on ~3 angstrom resolution structures

2008-10-21 Thread Martyn Winn
The residual B factors are only one contribution to the mean square displacements, so don't read too much into the numbers. In particular, there is an ambiguity between the trace of T and the mean residual B factor - you can take a chunk out of Tr(T) and give it to all the atoms in the TLS group. T