[ccp4bb] search-and-replace

2007-04-28 Thread shekeb . khan
Hello everyone, I have two pdb files for molecule A (A.pdb and A_polyala.pdb) from which I would like to make a hybrid file A_semi.pdb. A_semi.pdb will have some residues with full sidechains (so derived from A.pdb) and some residues with only a C-beta atom for a sidechain (so derived from

Re: [ccp4bb] buried surface area

2007-04-28 Thread Palm
>What is the easiest way, these days, to calculate the buried surface area >between two subunits of a protein? >Thanks, and Happy Friday, Gloria The PISA server from EBI does a nice job: fast overview, but also details if necessary. http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html greeting