This is a hard thing to do.
Eric Westhof is one of the masters:
http://www-ibmc.u-strasbg.fr/upr9002/westhof/
[EMAIL PROTECTED] wrote:
> HI ccp4ers, I have to model the structure of a 400nt RNA and I was
> wondering if there was free programs out there, similar to Modeller or
> other 3D predic
HI ccp4ers, I have to model the structure of a 400nt RNA and I was
wondering if there was free programs out there, similar to Modeller or
other 3D prediction program, to predict the structure of my RNA or
helping to built my pdb model. I have used several programs to model
the base-pairing an
I would also have to put in a vote for POPS if you know the protease
specificity well. You can input everything you know about primary
structure specificity (not secondary or tertiary) and search whole
proteomes for cut sites or just your favorite protein (cut and paste
sequence).
http://pops
Thanks, everyone!
This was a very popular answer: http://us.expasy.org/tools/
peptidecutter/
also
http://www.cbs.dtu.dk/services/NetCorona/
http://www.cbs.dtu.dk/services/NetPicoRNA/
and
If you are interested in the physiological, known cleavage sites, you
may also try one
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Hi Bill,
If you are interested in the physiological, known cleavage sites, you
may also try one of the possible searches at the MEROPS database:
http://merops.sanger.ac.uk/cgi-bin/show_substrate
Cheers,
Miguel
En/na Manish C Pathak ha escrit:
>
Hi Bill,
Peptide cutter does work for several cleavages.
http://www.expasy.ch/tools/peptidecutter/
regards
Manish
William Scott <[EMAIL PROTECTED]> wrote: Hi Citizens:
What programs/web sites would you recommend for prediction of enzyme
cleavage sites in a protein sequence?
Many thanks.
Hi Citizens:
What programs/web sites would you recommend for prediction of enzyme
cleavage sites in a protein sequence?
Many thanks.
Bill Scott
