Hi,
Somebody asked if they could be added as a maintainer for a Bioconductor
package. Is it possible to have more than one maintainer for a package?
My understanding was that packages were typically maintained by one person, but
I wanted to double-check. Otherwise, I see that I can add multip
the
git.bioconductor.org server.
Valerie
On 08/21/2018 01:51 PM, Warden, Charles wrote:
Hi,
Somebody asked if they could be added as a maintainer for a Bioconductor
package. Is it possible to have more than one maintainer for a package?
My understanding was that packages were typically m
Hi,
I would like to develop a Bioconductor package that calls Perl scripts for
certain functions. I currently have a standalone program written in Perl that
calls Rscript at certain steps, so I would like to switch this around.
It looks like I can call Perl scripts using the 'system' command,
Ok - thank you all for your feedback!
Best,
Charles
-Original Message-
From: Dan Tenenbaum [mailto:dtene...@fhcrc.org]
Sent: Wednesday, October 23, 2013 12:02 PM
To: Gabriel Becker
Cc: bioc-devel@r-project.org; Warden, Charles
Subject: Re: [Bioc-devel] Running Perl Scripts from R
Hi,
I am testing out my newly released COHCAP package:
http://bioconductor.org/packages/devel/bioc/html/COHCAP.html
I didn't see any warnings when I created the package, and there weren't any
warnings when Bioconductor tests the package (on any of the operating systems).
However, I have been t
et me know if you need anything else.
Thanks,
Charles
-Original Message-
From: Dan Tenenbaum [mailto:dtene...@fhcrc.org]
Sent: Monday, January 27, 2014 10:51 AM
To: Warden, Charles
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running Perl script with R-devel
Hi Charles,
-
0k_avg_by_island_test_wig/temp.txt
T:\BIC\cwarden\Methylation_Package\Protocol_Exchange\minfi_example/CpG_Site/450k_avg_by_island_test_wig'
system(cmd, intern=TRUE, wait=TRUE)
Please let me know if you need anything else.
Best,
Charles
-----Original Message-
From: Warden, Charles
Sen
larifies things. Please let me know if you still have any
questions.
Thanks,
Charles
-Original Message-
From: Dan Tenenbaum [mailto:dtene...@fhcrc.org]
Sent: Monday, January 27, 2014 11:27 AM
To: Warden, Charles
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running
an Tenenbaum [mailto:dtene...@fhcrc.org]
Sent: Monday, January 27, 2014 11:54 AM
To: Warden, Charles
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running Perl script with R-devel
- Original Message -
> From: "Charles Warden"
> To: "Dan Tenenbaum&qu
: Monday, January 27, 2014 12:38 PM
To: Warden, Charles
Cc: Dan Tenenbaum; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running Perl script with R-devel
Some quick ideas:
1. Before making the full call, call res <- system2(perlbin, "-v") to
assert no errors about running Per
o:dtene...@fhcrc.org]
Sent: Monday, January 27, 2014 12:41 PM
To: Warden, Charles
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running Perl script with R-devel
- Original Message -
> From: "Charles Warden"
> To: "Charles Warden" , "Da
..@fhcrc.org]
Sent: Monday, January 27, 2014 12:41 PM
To: Warden, Charles
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Problem running Perl script with R-devel
- Original Message -
> From: "Charles Warden"
> To: "Charles Warden" , "Dan Tenenbaum&q
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