[Bioc-devel] test coverage of a shiny app

lly test my app (Prostar()). And then, the result of packages_coverage is still equal to 0%. Is there anyone who has already developed a Shiny app with unit tests ? I would appreciate some examples. Thanks in advance Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laborat

[Bioc-devel] R CMD check error on shinytest package

). Thus, I had a an error on all platforms at the CHECK step.Will it be a problem to pass the tests and be in the next release ? Thanks Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA* *Biosciences

[Bioc-devel] Cannot push to release branch

Hi, I am Samuel Wieczorek, the developer of the two packages : DAPAR and Prostar. I have generated a ssh key and filled the necessary form but still cannot push changes in the RELEASE_3_5. Is there a step that I have missed ? Thanks for all Regards Sam _The error message is the following_

[Bioc-devel] Hook declined on a branch

on the master and upstream. Best regards Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA* *Biosciences and Biotechnology Institute of Grenoble (BIG)* *CEA / Grenoble* *17 avenue des Martyrs* *F-380

[Bioc-devel] Unable to create a remote branch

eate branches in upstream but here, I do not undertsand what I am doing wrong. Thanks for your help Best, Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA* *Biosciences and Biotechnology Institute

Re: [Bioc-devel] [PROVENANCE INTERNET] Unable to create a remote branch

Fixed ! the address for my git repositories was wrong ;-) Le 15/09/2017 à 10:23, Samuel Wieczorek a écrit : > Hi all, > > I try to create a remote branch but it fails. The branch is named tes3. > I used the following command : > > > git push origin tes3 > > > a

[Bioc-devel] Several ssh keys ?

Hi I would like to work on two different machines with Git and Bioconductor. Is it possible to have two ssh keys ? Best regards Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA* *Biosciences and

[Bioc-devel] git push to devel versions

package). Can you (re)explain to me the different steps are required and where to push my updates (origin ? upstream ? RELEASE_3_5 ?) ? Thanks Cheers Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA

[Bioc-devel] Date for the next release

Hi I am the developer of the packages DAPAR and Prostar. I have to plan in advance some work and I would like to synchronise this with the next release of Bioconductor. I know it is a bit early but do you know the date of the next release ? Will it be the 31th of Octobre as last year ? Thank

[Bioc-devel] New packages: DAPAR and Prostar

Samuel Wieczorek -- Samuel Wieczorek Etude de la Dynamique des Proteomes (EDyP) http://edyp.fr/ Laboratoire Biologie a Grande Echelle (BGE) U1038 INSERM/CEA/UJF Institut de Recherches en Technologies et Sciences pour le Vivant (iRTSV) CEA/Grenoble 17 rue des Martyrs F-38054 Grenoble Cedex 9 Tel

[Bioc-devel] Install devel version, dependancies missing

lable for package 'DAPAR'. Then, I checked the installed package on this computer and MSnbase in not present. What can I do to resolve this problem ? Thanks for your help Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle

[Bioc-devel] Build error on Moscato2

build in time ? Thanks Sam -- *Samuel Wieczorek Etude de la Dynamique des Protéomes (EDyP)* *Laboratoire Biologie à Grande Echelle (BGE)* *U1038 INSERM / CEA / UGA* *Biosciences and Biotechnology Institute of Grenoble (BIG)* *CEA / Grenoble* *17 avenue des Martyrs* *F-38054 Grenoble Cedex 9* */Tél

[Bioc-devel] Vignettes and package size

of my packages exceed the limit imposed by the Bioconductor guidelines. I know that at least one vignette is mandatory. I wonder if it is possible to put the entire user manual (source file, pdf file and images) and only the pdf file for the tutorial. Thanks Regards Sam -- *Samuel Wieczorek

[Bioc-devel] New version of PROSTAR and DAPAR packages

nt of these two packages is very active and we work now on new functionalities and processing tools that will be available soon Do not hesitate to test this tool and to give me a feedback of your experience. Best regards Samuel Wieczorek -- Samuel Wieczorek Etude de la Dynamique des Prote