[Bioc-devel] Continuing Github development workflow after submission to Bioconductor

2021-08-02 Thread Kelsey Chetnik via Bioc-devel
Hi, My lab is currently considering submitting our package to Bioconductor, but I am curious about how - if at all - this will affect our development workflow on Github. Specifically, I would like to know if after submission to Bioconductor, our lab's repo of the package remains independent of

[Bioc-devel] Large data frames in inst/extdata

2021-08-04 Thread Kelsey Chetnik via Bioc-devel
I have a package I would like to submit to Bioconductor. Some functions of the package utilize precalculated data frames currently stored in the inst/extdata directory. These data frames result in the source package exceeding 5 MB (~25 MB). Are there any best practices or recommendations for st

[Bioc-devel] Not possible to create runnable examples for package

2021-08-10 Thread Kelsey Chetnik via Bioc-devel
I am preparing a package for submission to Bioconductor. One of the errors I got from running BioCheck() was "At least 80%of man pages documenting exported objects must have runnable examples". The way our package is constructed makes meeting this requirement practically impossible. Our package