Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment

2025-01-08 Thread Helena L. Crowell
UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C > > time zone: Europe/Madrid > tzcode source: system (glibc) > > attached base packages: > [1] stats4stats graphics grDevices utils dataset

Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment

2025-01-08 Thread Helena L. Crowell
SCE inherits from SE, but not vice versa. So setting the class union on SCE (not SE) will do the trick. Briefly, Anything defined on an SCE will work upstream (SE), but anything defined on SE will not work downstream (SPE, SCE). *** This works: library("Matrix") library("Biobase") library("Sum