Re: [Bioc-devel] Access check.log file after error

2015-11-11 Thread Brian Long
Hi Peter, Jim is right, the content of /Users/biocbuild/bbs-3.3-bioc/meat/SWATH2stats.Rcheck/00check.log is nearly identical to what you see on the web . The only difference, is that the copy on web is a day

Re: [Bioc-devel] Access check.log file after error

2015-11-11 Thread Brian Long
dler) 9: withVisible(code) 10: disaggregate(data.max.test2) 11: stop(paste("The number of transitions annotated and measured do not match in the following transitions:\n", paste(unlist(n.transitions[n.transitions2 != n.transitions4]), collapse = ", "))) testthat results ===

Re: [Bioc-devel] remove history vignettes

2015-11-19 Thread Brian Long
All, Sorry about the slow reply. This should now be resolved, looking at : http://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html As you know, these pages are updated automatically, but a part of the

Re: [Bioc-devel] fix build error

2015-11-30 Thread Brian Long
Hi Aitor, Sorry about that. We're currently experiencing a problem with our build system (which generates these HTML pages). A workaround to the problem has been implemented, however we'll need to wait for today's run of the

Re: [Bioc-devel] winbuilder1 in the workflow CI system offline ...

2015-12-02 Thread Brian Long
Hi Bernd, We're working to resolve this issue. We'll let you know once it's fixed and thank you for bringing it to our attention. Thanks, Brian On Wed, Dec 2, 2015 at 3:36 PM, Bernd Klaus wrote: > Dear all, > > unfortunately, winbuilder1 is offline since a day or so, > so that new submissions

Re: [Bioc-devel] winbuilder1 in the workflow CI system offline ...

2015-12-02 Thread Brian Long
= downloaded 36.7 MB 'select()' returned 1:many mapping between keys and columns Quitting from lines 229-264 (dummy-Workflow.Rmd) Error: processing vignette 'dummy-Workflow.Rmd' failed with diagnostics: invalid genes selected Execution halted Build s