Dear BioC team,
I am having the same error as many others (the missing BiocStyle
issue) and I wanted to fix it. But I somehow am not getting into
git.bioconductor.org anymore :
$ git fetch --all
Fetching origin
Fetching upstream
ssh: connect to host git.bioconductor.org port 22: Connection
ng-list, and also on this blogpost:
https://bioconductor.github.io/biocblog/posts/2023-03-01-transition-to-devel/
Sarvesh
On Tue, 4 Apr 2023 at 19:38, Aditya Bhagwat via Bioc-devel <
bioc-devel@r-project.org> wrote:
Dear BioC team,
I am having the same error as many others (the missing Bio
rk 14263
From: Bioc-devel on behalf of
Aditya Bhagwat via Bioc-devel
Sent: Wednesday, April 5, 2023 7:33 AM
To: Sarvesh Nikumbh
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Fixing autonomics - ssh: connect to host
git.bioconductor.org port 22: Connection timed out
Thank you v
Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of
Aditya Bhagwat via Bioc-devel
Sent: Wednesday, April 5, 2023 7:33 AM
To: Sarvesh Nikumbh
Cc: bioc-de
Dear BioC devel,
autonomics devel install/build/checks:
https://bioconductor.org/checkResults/devel/bioc-LATEST/autonomics/
fine on palomino3 (win) and merida1 (mac).
'fails to locate weave' on nebbiolo (ubuntu).
Could this be a nebbiolo rather than an autonomics issue?
Thankyou : )
Aditya
Dear bioc-devel,
autonomics underwent continued development since its submission two years ago.
The new functionality was recently pushed to autonomics devel to make
it accessible to users.
Not suprisingly, the green traffic lights turned red.
The puzzling thing, though, is that, on my machin
nette re-building failed.
Execution halted
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of
Hey guys,
Do we have Uniprot sequences in AnnotationHub ?
Not being able to find them.
Thankyouverymuch : )
Aditya
--
Aditya Bhagwat
Translational Proteomics ∙ Philipps-University Marburg
Biological Pharmacological Center ∙ Room A406
Tel.: +49 6421 28 27403
___
-devel@r-project.org
Subject: Re: [Bioc-devel] AnnotationHub: uniprot seqs ?
On Tue, May 21, 2024 at 4:18 AM Aditya Bhagwat via Bioc-devel <
bioc-devel@r-project.org> wrote:
Hey guys,
Do we have Uniprot sequences in AnnotationHub ?
That does not seem practical.
Please see
Dear bioc-devel,
autonomics release is giving check errors (since recently).
autonomics devel had the issue fixed (already months ago).
Is there a need to fix the issue in autonomics release?
Knowing that devel is becoming the new release soon.
Thankyou for feedback : )
https://www.bioconductor
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