Re: [Bioc-devel] Important Bioconductor Release Deadlines

On Fri, Apr 5, 2024 at 12:56 AM Anatoly Sorokin wrote: > > Dear Levi, > > minor correction: not requiring but working with. Testing against r-devel > and requiring it for development are two different things. If the > development and maintenance of the Bioconductor package would be my only > respo

Re: [Bioc-devel] Important Bioconductor Release Deadlines

It is also important to note that R-devel is available throughout this last 6 months since the previous 3.18 release. Out devel branch has been building against it all along. It is available via direct download, dockers, github actions, etc. That is why we have the two branches of Bioconductor

Re: [Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

I will have to look at how offline changes the loading of the files. That is an odd and unexpected behavior. They aren't actually duplicate files, what is happening is it is displaying the entry for the bam file (.bam) and the index file (.bai) as separate entries when offline instead of assoc

Re: [Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

I found the bug. Testing and pushing up a fix. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on beha

Re: [Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

that's great, thank you so much Lori! robert. On 4/5/24 15:02, Kern, Lori wrote: > I found the bug.  Testing and pushing up a fix. > > Cheers, > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > El

Re: [Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

Of Note: The fix actually occurs in the AnnotationHub code base. It has been pushed to both release and devel. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 _

Re: [Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

Nice example of a reproducible bug report and rapid bug-fix! [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] plyranges maintainer update

Hi bioc-devel, I would like to request for me to removed as maintainer of the plyranges package and for > to be added as maintainer. Thank you for your help. Kind regards, Stuart Stuart Lee stuart.andrew@gmail.com