Re: [Bioc-devel] Package name

Good point. I'll open an issue on the github to fix. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Laur

Re: [Bioc-devel] NxtIRFcore build error; missing recently submitted data package NxtIRFdata

NxtIRFdata if all goes well will build and be available today, and therefore be available for NxtIRFcore on tomorrow's build. Given that these are newly added packages they will not be removed if ERRORing on tomorrow's build. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Compre

[Bioc-devel] mosbi package: Suggested dependency not available

Hi everyone, My new package mosbi (https://bioconductor.org/packages/devel/bioc/html/mosbi.html) gets a MacOS build 'ERROR', because a suggested dependency 'runibic' is not available for that platform. The reviewers stated on github (https://github.com/Bioconductor/Contributions/issues/2252

Re: [Bioc-devel] mosbi package: Suggested dependency not available

Yes you will be fine. It looks like runibic is failing possibly of a missing dependency on our end and we will investigate. Once the package builds your package should also build correctly. Cheers Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of

[Bioc-devel] How to simplify install when package dependency requires compilation from source

Hi all, How do I simplify install when a dependency is available only in source form and requires compilation using C/C++/Fortran? My package netDx has "clusterExperiment" as a dependency (Suggests). When I run BiocManager::install("netDx",dependencies=TRUE), I get: "Package which is only availa

Re: [Bioc-devel] long tests results in package RSS feed

On 20/10/2021 22:40, Pierrick Roger wrote: It seems the results of the long tests are not sent to the package RSS feed. Am I missing something? Is there another feed? We only have RSS feeds for Software builds and Data Experiment builds: https://bioconductor.org/developers/rss-feeds/ If no

[Bioc-devel] Deprecation genphen

Dears, we would like to deprecate genphen as its functionality has been superseded by other R packages. Would it be possible to begin the deprecation process? Best, Simo ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/

Re: [Bioc-devel] mosbi package: Suggested dependency not available

Hi Tim, runibic has a compilation error on Mac because its native code uses OpenMP. However package code should not use OpenMP on Mac (see https://stat.ethz.ch/pipermail/r-sig-mac/2019-June/012995.html). I just marked runibic as unsupported on Mac. It seems that mosbi only uses runibic in on

Re: [Bioc-devel] How to simplify install when package dependency requires compilation from source

Hi Shraddha, I don't think you want to start the business of building and distributing Mac binary packages from other people to your users. Even if you were doing this, BiocManager::install() would not know about these binaries, and I'm not sure that there would be a simple way to make your u

Re: [Bioc-devel] long tests results in package RSS feed

The feeds for the long tests are here: https://bioconductor.org/rss/build/longtests/packages/ I also added feeds for the workflow and book builds: https://bioconductor.org/rss/build/workflows/packages/ https://bioconductor.org/rss/build/books/packages/ I'll update the page at https://bi