[Bioc-devel] cannot fetch upstream git

2018-01-30 Thread bruno contrino via Bioc-devel
Hello,  I am having some issues pushing some changes to my package. I am following the steps here:Bioconductor - Sync existing repositories | | | | || | | | | | Bioconductor - Sync existing repositories | | | | And at step 3 I get the following: Permis

Re: [Bioc-devel] Should GenomicFeatures really depend pn RMySQL ? Is it time to migrate to RMariaDB ?

2018-01-30 Thread Hervé Pagès
This is done in GenomicFeatures 1.31.6. Note that I also made a few changes to makeTxDbFromUCSC() to make it a little bit faster (about 2x). @Kasper: moving the makeTxDb* functions to a GenomicFeaturesBuildTools or GenomicFeaturesForge package is maybe an idea to explore... H. On 01/26/2018 06

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-30 Thread Simina Boca
Hi Nitesh, I submitted this key as well a couple of days ago: ssh-rsa B3NzaC1yc2EDAQABAAACAQDP91Ifm9VtF76jYs4gPwJQx0nU3LBV rsWwX4Eba1SOIHlHiXb45RHFZ0tvwV4yMNb9IXGAA3Kg0OnJs1YS1ddXTVkK zyXAk4nlyiwSSSBe8gxhS1wPX5c8Zv8n28T71/bn90z61RKwkZc+hAZjrK/2Xiw/ FwFsnJfcEIrEE3HT86WVDeXdNPDzIxb/MSmjRmjS4

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-30 Thread Turaga, Nitesh
Yes, that is the key we have. Please send me more information,( output of these commands) git remote -v ssh -T g...@git.bioconductor.org | grep swfdr You might want to make sure you are using correct private key by setting up a config file in your SSH. (http://bioconductor.or

Re: [Bioc-devel] updating Bioconductor package that is already on Github

2018-01-30 Thread Simina Boca
Sure! This is for the MultiMed package, not swfdr, so I made that change below: ~\Documents\GitHub\MultiMed [master ≡]> git remote -v origin https://github.com/SiminaB/MultiMed.git (fetch) origin https://github.com/SiminaB/MultiMed.git (push) upstreamg...@git.bioconductor.org:packages/Mu