Hi,
I got a new Linux computer, cloned my package from github, made some changes. I
am able to update the changes to github, but can not push it to Bioconductor
svn repository. Can someone help me to solve the problem.
The following is what I did:
git svn clone https://github.com/xuz1/EN
I got error when I try order for Rle object by following codes:
library("BiocGenerics")
library(XVector)
order(Rle(1))
## Error in match.arg(method) : 'arg' must be of length 1
> sessionInfo()
R Under development (unstable) (2017-05-10 r72667)
Platform: x86_64-apple-darwin16.5.0 (64-bit)
Running
Hi Jianhong,
I can't reproduce this but I'm using R 3.4.0.
You seem to be using Bioc devel (aka BioC 3.6) with R devel.
This is not supported. Both, BioC 3.5 (current release) and
BioC 3.6 require R 3.4.0.
Cheers,
H.
On 05/11/2017 01:11 PM, Ou, Jianhong wrote:
I got error when I try order for
Thank you Hervé,
I got that. Good to know that BioC 3.6 require R 3.4.0.
Yours Sincerely,
Jianhong Ou
TEL: 508-856-5379
LRB 608
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
UMASS Medical School
364 Plantation Street Worcester,
MA 01605
Confidenti
There is a bug in S4Vectors, but thanks to an R 3.4 bug in the methods
package (recently fixed in devel), the bug is masked. So, we should
fix S4Vectors. The problem is that order,Rle has a default for the
'method' argument that differs from that of the generic. Since R 3.3,
base::order() is smart
Hi Michael,
On 05/11/2017 03:27 PM, Michael Lawrence wrote:
There is a bug in S4Vectors, but thanks to an R 3.4 bug in the methods
package (recently fixed in devel), the bug is masked. So, we should
fix S4Vectors. The problem is that order,Rle has a default for the
'method' argument that differs
On 05/11/2017 06:44 PM, Hervé Pagès wrote:
Hi Michael,
On 05/11/2017 03:27 PM, Michael Lawrence wrote:
There is a bug in S4Vectors, but thanks to an R 3.4 bug in the methods
package (recently fixed in devel), the bug is masked. So, we should
fix S4Vectors. The problem is that order,Rle has a de
