Re: [Bioc-devel] [Bioc-degel] AnnotationHub needed in the description of the ExperimentHubData

2016-12-01 Thread Marcin Kosiński
Hi Valerie, Thanks for the responce. Yes I have ExperimentHub in Depends. In the following code results I present the `query` NOTE that comes out after devtools::check(). Then I present the content of my DESCRIPTION file and NAMESPACE. After I added AnnotationHub to Imports and importFrom(Annotat

[Bioc-devel] package vignette error : external data can't be captured when compiling package vignette

2016-12-01 Thread Jurat Shayidin
Hi BiocDevel : I am getting vignette error when I building my packages, and external data can't be captured by system.file() . I did unit test all function of my packages, it works fine. When I am going to compile package vignette, test input bed file can't be detected. However, I used devtools::i

Re: [Bioc-devel] package vignette error : external data can't be captured when compiling package vignette

2016-12-01 Thread Hervé Pagès
Hi, Make sure you understand the difference between the *package source tree*, which you control and where you must create the inst/ folder, and the *package installation folder*, which gets created and populated by 'R CMD INSTALL'. The exact location of the *package installation folder* doesn't