Hi,
destiny ’s git mirror has been out of sync for quite some time.
The currently latest SVN revision has bumped the version to 1.3.4 , but git
master is still on 1.3.0 .
Thanks for looking at it,
Philipp
Helmholtz Zentrum Muenchen
Deutsches Forschungszentrum fuer Gesundheit und Umwe
Dear Bioc team,
A friend of mine had the following trouble to install the biosigner package on
R 3.2.3.
I do not understand why the package would require a dedicated version of R (in
particular >3.2.3) except that it uses S4 methods, and if/how I have to specify
an R version within the package
Dear Etienne,
Bioconductor versions are linked to R versions. As the biosigner package
is a recent addition to Bioconductor (Bioc version 3.3), it will require
a recent R version, i.e. the R version that was current when Bioc 3.3
was released. That is how things are, guaranteeing a coherent set o
Hi Etienne,
The BiocInstaller package, which contains the biocLite() function, looks
in different Bioconductor repositories depending on what version of R is
being run. BiocInstaller 1.20.* (your code below) was looking in the
previous release repository (Bioconductor 3.1 and R 3.2) where the
bios
On 8 August 2016 21:29, Gabe Becker wrote:
> Alex (et al),
>
> Yihui is currently working towards a CRAN release for a modern version of
> DT, so sometime "soon" (I have no insight into what definition of soon is
> in use here) things should work in your particular case.
Soon actually means n
Hi,
Currently the build for `recount` is failing in the Linux build
machine
http://www.bioconductor.org/checkResults/3.4/bioc-LATEST/recount/zin1-buildsrc.html.
It's been failing with the same error message for a while. The build
message ends with:
Setting options('download.file.method.GEOquery'
1.33.11 is the latest version in svn.
https://www.bioconductor.org/checkResults/3.4/bioc-LATEST/zin1-R-instpkgs.html
will tell you (with a reasonable degree of accuracy) which version of which
package is installed on zin1, it reports that it has version 1.33.11 installed.
The issue with recount
Actually it looks like it was a permissions issue with the directory
/tmp/udcCache. I removed this directory (as superuser) and that error no longer
happens.
Now I get a different error which seems unrelated:
...
* creating vignettes ... ERROR
Quitting from lines 2-32 (SRP009615-results.Rmd)
Er
