Re: [Bioc-devel] Common workflow to build an microarray annatation package, like hgu133a.db

2016-01-06 Thread Zhilong Jia
Hi Tim, I posted the question here is because Maintainers of most of the annotation pacakage is Bioconductor Package Maintainer, though I posted at the support website (https://support.bioconductor.org/p/76545/). Probably there should be a common workflow to handle this kind of problem for the cor

[Bioc-devel] Build checks not representing updates to packages

2016-01-06 Thread Venkat Malladi
Hi, I have fixed a bug in the 3.2 release of my package as well as updating the devel version of the package, however when I look at the Build reports it doesn’t look like my changes are reflected. How often does the build check happen and is there a time that the commits have to be made to be

Re: [Bioc-devel] Build checks not representing updates to packages

2016-01-06 Thread Dan Tenenbaum
Please see: http://www.bioconductor.org/developers/how-to/source-control/#where-to-commit-changes Dan - Original Message - > From: "Venkat Malladi" > To: "bioc-devel" > Sent: Wednesday, January 6, 2016 7:19:37 AM > Subject: [Bioc-devel] Build checks not representing updates to package

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Ludwig Geistlinger
Dear Martin, I finally found the time to make the code available via GitHub: https://github.com/lgeistlinger/MapIds and added you as a collaborator. This is currently just a quick put-together for you to get an impression. NA and duplicated mappings currently need to be removed to ensure uniquen

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Morgan, Martin
Thanks Ludwig I'll have a look. Martin From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] Sent: Wednesday, January 06, 2016 12:07 PM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel]