Re: [Bioc-devel] Announcing newtest coverage shields

2015-09-15 Thread Andrzej Oleś
Thank you Dan! The codecov.io mirror seems to be up-to-date now. It's great to see Bioconductor's and individual packages' code coverage increasing! Cheers, Andrzej On Thu, Sep 10, 2015 at 10:59 PM, Dan Tenenbaum wrote: > Hi Andrzej, > > > - Original Message - > > From: "Andrzej Oleś"

Re: [Bioc-devel] AnnotationHub: cleanup

2015-09-15 Thread Kasper Daniel Hansen
On Tue, Sep 15, 2015 at 12:25 AM, Morgan, Martin < martin.mor...@roswellpark.org> wrote: > Hi Kasper -- we'll try to act on these, but some comments / looking for > clarification... > > > -Original Message- > > From: Bioc-devel [mailto:bioc-devel-boun...@r-project.org] On Behalf Of > > Kas

Re: [Bioc-devel] as.character method for GenomicRanges?

2015-09-15 Thread Michael Lawrence
Did this as.character method ever get added? It was a good idea, and we should add it even though we haven't figured out the table stuff yet. It's fine if it appends the strand whenever there is at least one range with +/-. Michael On Mon, Apr 27, 2015 at 2:23 PM, Hervé Pagès wrote: > On 04/27/

Re: [Bioc-devel] as.character method for GenomicRanges?

2015-09-15 Thread Michael Love
+1 I was in need of this function yesterday and generally about once a week, when looking up ranges in IGV or UCSC. On Tue, Sep 15, 2015 at 12:59 PM, Michael Lawrence < lawrence.mich...@gene.com> wrote: > Did this as.character method ever get added? It was a good idea, and we > should add it eve

Re: [Bioc-devel] as.character method for GenomicRanges?

2015-09-15 Thread Hervé Pagès
Hi Michael and Michael, It's on its way. Probably before the end of the week. Thanks for the reminder! H. On 09/15/2015 10:07 AM, Michael Love wrote: +1 I was in need of this function yesterday and generally about once a week, when looking up ranges in IGV or UCSC. On Tue, Sep 15, 2015 at 12

Re: [Bioc-devel] as.character method for GenomicRanges?

2015-09-15 Thread Tim Triche, Jr.
rad, I was just about to say, "hey, I've written that function in 3 different places, I think I could send in a patch..." and then of course Herve is on it. I need to remember to leave things to the professionals... --t On Tue, Sep 15, 2015 at 10:38 AM, Hervé Pagès wrote: > Hi Michael and Mich

Re: [Bioc-devel] AnnotationHub: cleanup

2015-09-15 Thread Morgan, Martin
Hi Kasper -- For the proxy, I think the idea is httr::config(use_proxy("https://my.proxy";)) Martin From: Kasper Daniel Hansen [mailto:kasperdanielhan...@gmail.com] Sent: Tuesday, September 15, 2015 10:35 AM To: Morgan, Martin Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] AnnotationHub