Hi,
I am trying to analyze RNA-Seq Data with DESeq2 and could use some help.
I have 2 genotypes and 14 timepoints. I want to find differences in gene
expression between both genotypes overall and at every timepoint and
between every two timepoints in each genotype.
Here is what I did so far.
hi Nadia,
The Bioconductor support site for users now lives here:
https://support.bioconductor.org
I've answered a couple of questions already on how to analyze time
series datasets with DESeq2, so maybe take a look around there and
feel free to post a question tagged with 'deseq2' if you still h
Package developers --
Each Bioconductor release is accompanied by release notes that mention
new packages and other significant project developments. For the
forthcoming release we will include release notes for
individual packages, so that users have an easy way to survey changes
in their favorit
May I suggest that people use the new'ish NEWS.Rd format where the file is
placed in
inst/NEWS.Rd
and the content is written using Rd format.
Kasper
On Wed, Oct 8, 2014 at 1:30 PM, Dan Tenenbaum wrote:
> Package developers --
>
> Each Bioconductor release is accompanied by release notes that
On Mon, Oct 6, 2014 at 7:03 PM, Henrik Bengtsson wrote:
> On Mon, Oct 6, 2014 at 6:48 PM, Henrik Bengtsson
> wrote:
>> On Mon, Oct 6, 2014 at 5:33 PM, Martin Morgan wrote:
>>> On 10/06/2014 04:52 PM, Henrik Bengtsson wrote:
Maybe you could use
\RequirePackage{Bioconductor}
>
Dear all,
I noticed that the classical bioc-help email was shut down completely, instead
we have to use the new bioc support forum. I feel that we can be a little more
cautious on this.
First, there should be tens of hundreds of subscribed users to the email list.
This is a extremely valuable r
On 10/08/2014 11:41 AM, Henrik Bengtsson wrote:
You may want to make those function local to latex(). I haven't
verified it works (won't have time), but I bet a beer that it will
work.
I'll take you up on the bet, at least for some definition of 'work'. For
instance when debugging a vignette
Hi Weijun --
Thanks for the comments...
On 10/08/2014 12:15 PM, Luo Weijun wrote:
Dear all, I noticed that the classical bioc-help email was shut down
completely, instead we have to use the new bioc support forum. I feel that we
can be a little more cautious on this.
First, there should be t
Martin,
Thanks for all the details/info. I see what you say.
For the support forum, it is nice to have the email notification. It would be
great if we can reply to these messages via email. It is quicker to reply this
way, and we have both email access and web access (like the classic email
ar
- Original Message -
> From: "Luo Weijun"
> To: bioc-devel@r-project.org, "Martin Morgan"
> Sent: Wednesday, October 8, 2014 3:51:22 PM
> Subject: Re: [Bioc-devel] Keep the bioc-help email list running?
>
> Martin,
> Thanks for all the details/info. I see what you say.
> For the suppor
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