[Bioc-devel] [JOB] NIH-Wide Stadtman Tenure-Track Recruitment

2014-09-10 Thread Sean Davis
The National Institutes of Health is now accepting applications for tenure-track positions through the Earl Stadtman recruitment mechanism. Details are available here: http://goo.gl/vF95Pi Sean [[alternative HTML version deleted]] ___ Bioc-de

[Bioc-devel] Fwd: [JOB] NIH-Wide Stadtman Tenure-Track Recruitment

2014-09-10 Thread Sean Davis
The National Institutes of Health is now accepting applications for tenure-track positions through the Earl Stadtman recruitment mechanism. Details are available here: http://goo.gl/vF95Pi Sean [[alternative HTML version deleted]] ___ Bioc-de

Re: [Bioc-devel] Changing the name of a package

2014-09-10 Thread Dan Tenenbaum
Hi Thomas, - Original Message - > From: "Thomas J Hardcastle" > To: bioc-devel@r-project.org > Sent: Monday, September 8, 2014 5:19:09 PM > Subject: [Bioc-devel] Changing the name of a package > > I have a package on the development build called riboSeq; my > biological > collaborators h

Re: [Bioc-devel] biocLite message "R package not available" is confusing

2014-09-10 Thread davide risso
I just wanted to add my support to Josef request. During the last few weeks I received several emails from users asking me if I "plan to make a version of RUVSeq compatible with R 3.1." (My RUVSeq package is in devel). I understand the error comes directly from install.packages, but is there a wa

Re: [Bioc-devel] biocLite message "R package not available" is confusing

2014-09-10 Thread Martin Morgan
On 09/10/2014 10:39 AM, davide risso wrote: I just wanted to add my support to Josef request. During the last few weeks I received several emails from users asking me if I "plan to make a version of RUVSeq compatible with R 3.1." (My RUVSeq package is in devel). I understand the error comes dir

Re: [Bioc-devel] biocLite message "R package not available" is confusing

2014-09-10 Thread davide risso
Thanks Martin, yes, you're right about the "use the devel version," but perhaps biocLite could check if the package is available in the devel, just to distinguish between a package that is not in Bioconductor (mistyping?) and one that is not yet available in release. Just my two cents. Davide O

Re: [Bioc-devel] biocLite message "R package not available" is confusing

2014-09-10 Thread Martin Morgan
On 09/10/2014 11:37 AM, davide risso wrote: Thanks Martin, yes, you're right about the "use the devel version," but perhaps biocLite could check if the package is available in the devel, just to distinguish between a package that is not in Bioconductor (mistyping?) and one that is not yet availa

Re: [Bioc-devel] Please bump version number when committing changes

2014-09-10 Thread Martin Morgan
On 09/08/2014 06:15 AM, Gabe Becker wrote: Michael, Tags could work. Another approach would be to update the repository and then look in the log to see if the version number was changed in the most recent commit. In a sense this is the converse of what our GRANBase package does when locating hi

Re: [Bioc-devel] biocLite message "R package not available" is confusing

2014-09-10 Thread davide risso
Hi Martin, > I wonder where the users are getting the notion that they _should_ be able > to install RUVSeq in Bioc 2.14? I guess they follow the link in the Nature > Methods paper to the devel landing page, then follow the 'Installation' > instructions without paying attention to the various 'dev