Re: [Bioc-devel] CITATION on the Bioc package landing page?

2014-05-30 Thread Martin Morgan
On 04/25/2014 01:46 PM, Martin Morgan wrote: On 04/24/2014 01:51 PM, Michael Lawrence wrote: Agreed. Would be nice if the build system could detect changes to CITATION and update the web page accordingly. Must already happen for DESCRIPTION. This will be implemented (over the next several week

Re: [Bioc-devel] CITATION on the Bioc package landing page?

2014-05-30 Thread Vincent Carey
Very nice. We'll give it a couple of weeks and then announce more broadly? I'll start improving my package citations shortly. On Fri, May 30, 2014 at 9:11 AM, Martin Morgan wrote: > On 04/25/2014 01:46 PM, Martin Morgan wrote: > >> On 04/24/2014 01:51 PM, Michael Lawrence wrote: >> >>> Agreed

Re: [Bioc-devel] CITATION on the Bioc package landing page?

2014-05-30 Thread Michael Lawrence
I was just about to say that this should be a nice carrot for authors to start improving their citations... On Fri, May 30, 2014 at 6:27 AM, Vincent Carey wrote: > Very nice. We'll give it a couple of weeks and then announce more > broadly? I'll start improving > my package citations shortly.

Re: [Bioc-devel] CITATION on the Bioc package landing page?

2014-05-30 Thread Vincent Carey
yes. now i have hunted around a little bit but do not find the following utility: convert a BibTex text file to a citEntry structure suitable for including in CITATION. we can import bibtex using the bibtex package, coerce to bibentry, but not clear how to convert to citEntry. utils::bibentry is

[Bioc-devel] viewMedians

2014-05-30 Thread Michael Lawrence
Herve, How hard do you think it would be to add a viewMedians? It would be nice to have a robust average of e.g. coverage. Also, many genotypers including GATK summarize non-alt runs using the median. We want to be consistent. Thanks, Michael [[alternative HTML version deleted]] ___

Re: [Bioc-devel] viewMedians

2014-05-30 Thread Hervé Pagès
Hi Michael, On 05/30/2014 11:37 AM, Michael Lawrence wrote: Herve, How hard do you think it would be to add a viewMedians? It would be nice to have a robust average of e.g. coverage. Also, many genotypers including GATK summarize non-alt runs using the median. We want to be consistent. Don't