On Thu, Apr 17, 2014 at 2:37 AM, Hervé Pagès wrote:
> Hi Vince,
>
>
> On 04/10/2014 08:16 AM, Vincent Carey wrote:
>
>> seems like something we should use more routinely, and it was not
>> straightforward for me to find it in IRanges
>>
>
> I could do that but...
>
> Good object design would be
Annotated is an implementation of metadata(); it would be nice to keep
interface separate from implementation, if the interface is general enough,
and it might be in this case.
On Wed, Apr 16, 2014 at 11:37 PM, Hervé Pagès wrote:
> Hi Vince,
>
>
> On 04/10/2014 08:16 AM, Vincent Carey wrote:
>
Hi,
When I run
source("http://bioconductor.org/biocLite.R";)
biocLite("BiocUpgrade")
on a stable R-3.1.0 with bioc 2.14 already installed, bioc wants to
upgrade to bioc 3.0 (devel):
Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
Upgrade all packages to Bioconductor
HI,
On Thu, Apr 17, 2014 at 7:09 AM, Julian Gehring wrote:
> Hi,
>
> When I run
>
> source("http://bioconductor.org/biocLite.R";)
> biocLite("BiocUpgrade")
>
> on a stable R-3.1.0 with bioc 2.14 already installed, bioc wants to
> upgrade to bioc 3.0 (devel):
>
> Bioconductor version 2.14 (B
Hi,
The IRanges package is too big and hard to maintain (90 classes, 157
generics, 844 methods, 447 ordinary functions). I'm going to start
moving its lowest level stuff to a new package called S4Vectors. The
idea is to end up with 2 smaller and more focused packages that should
be easier to ma
Hi Jim,
Thank you very much for the detailed response, that's very helpful. And
apologies for the delayed response on my part.
Cheers,
_Taku
On Thu, Mar 27, 2014 at 6:38 AM, James W. MacDonald wrote:
> Hi Taku,
>
> This 'error' is not due to anything in the illuminahumanv4.db package. All
Hi,
I just wanted to apologize for some spam that was sent by a process I
was testing. If you have received any strange spam from
biocbu...@fhcrc.org this is an accident and you can ignore or delete it.
Marc
___
Bioc-devel@r-project.org mailing l
I am in the processing of deprecating 'curv2Filter', 'curv1Filter' and
'norm2filter' in 'flowCore' and make these three filters available in
'flowStats'.
Here is what I am trying to do:
1. add warning message in 'flowCore' through '.Deprecate()'
2. copy the S4 classes and methods and constructors
