[Bioc-devel] map between NCBI GEO GPLs and BioC chip annotation packages

2012-12-21 Thread Andreas Heider
Dear BioC mailing list, I need a programmatic way to map BioC chip annotation packages (like "hgu133plus2.db") to an NCBI GEO chip annotation identifier (like "GPL570" or "GPL96"). I discovered the getBiocPlatformMap function in GEOmetadb package, but it is not sufficient as it only contains about

[Bioc-devel] Rsamtools segfault

2012-12-21 Thread Michael Lawrence
I can segfault R by doing this: coverage(BamFile(character())) This was with Rsamtools_1.11.12. Michael [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] Rsamtools segfault

2012-12-21 Thread Martin Morgan
On 12/21/2012 10:56 AM, Michael Lawrence wrote: I can segfault R by doing this: coverage(BamFile(character())) This was with Rsamtools_1.11.12. Thanks should be caught in 1.11.14. Martin Michael [[alternative HTML version deleted]] ___