Hi Gosia,
The workflow package transition will take place a few weeks after the Software
and the Data package transition. Till that point, I suggest you use SVN
directly to commit to the server.
Sorry for the confusion.
Best,
Nitesh
> On Aug 11, 2017, at 7:10 AM, Malgorzata Nowicka wrote:
>
Hi,
All is clear now. I will wait for the transition then.
Thank you for all the help.
Gosia
> On 10 Aug 2017, at 18:52, Turaga, Nitesh
> wrote:
>
> In the meantime,
>
> You can choose to simply checkout the SVN repo, and commit directly to it.
>
> Nitesh
>
>
>> On Aug 10, 2017, at 12:
In the meantime,
You can choose to simply checkout the SVN repo, and commit directly to it.
Nitesh
> On Aug 10, 2017, at 12:46 PM, Turaga, Nitesh
> wrote:
>
> Hi Gosia,
>
> The cytofWorkflow was added to the wrong svn location, and then moved.
>
> I really don't know whether Bioconductor-m
Hi Gosia,
The cytofWorkflow was added to the wrong svn location, and then moved.
I really don't know whether Bioconductor-mirror mirrors workflow packages; I
think not, so the basic step of cloning from the mirror is not appropriate.
Roughly, I think the strategy would be to configure, on your
Hi Nitesh,
If I skip the "update_remore.sh" step, I do not get the devel branch created.
One thing I have noticed is that in the git log there is Rpacks/cytofWorkflow
in the git-svn-id. Should'n it be workflows/cytofWorkflow as well? Maybe this
causes the problems?
Best,
Gosia
$ git clon
Hi Gosia,
I think you should repeat the steps, but completely skip the “update_remote.sh”
bit.
It’s setting your URL to the wrong location, I’ll show it below:
$ git svn --username=m.nowicka dcommit --add-author-from
Committing to
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/c
Hello Nitesh,
thank you for your response.
Following your steps, git snv rebase works, but I get an error at git svn
--username=m.nowicka dcommit --add-author-from step:
$ git clone https://github.com/gosianow/cytofWorkflow.git
$ curl -O
https://raw.githubusercontent.com/Bioconductor/mirror/
Hi Gosia,
I tried to reproduce your error. But I’m not sure there have been any changes
on either your Github repo, or your SVN. Both repositories are at the exact
same location right now.
Please try these commands on a “fresh” clone of your GitHub repo.
$ git clone https://github.com/gosian
You are correct that it is because this is a workflow package and not a
software package. The workflow package location is
/trunk/madman/workflows/
It should be updated there.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
On 05/11/2017 10:02 AM, Xu, Zongli (NIH/NIEHS) [E] wrote:
Hi,
I got a new Linux computer, cloned my package from github, made some
changes. I am able to update the changes to github, but can not push
it to Bioconductor svn repository. Can someone help me to solve the
problem.
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