- Original Message -
> From: "Sean Davis"
> To: "Martin Morgan"
> Cc: "bioc-devel"
> Sent: Wednesday, November 30, 2016 1:20:58 PM
> Subject: Re: [Bioc-devel] problems installing cran dependencies with BioC
> devel in mac
>>
OS X El Capitan 10.11.6
>>>
>>> locale:
>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>
>>> attached base packages:
>>> [1] stats graphics grDevices utils datasets methods base
>>>
>>>
namespace (and not attached):
[1] tools_3.4.0
Thanks very much in advance,
Best wishes,
Andrea
From: Vincent Carey
Sent: 30 November 2016 12:39:12
To: Rodriguez Martinez, Andrea
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] problems installing cra
Thanks very much!
From: Nitesh
Sent: 30 November 2016 16:39:34
To: Rodriguez Martinez, Andrea; Kasper Daniel Hansen
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] problems installing cran dependencies with BioC devel
in mac
This should help:
https
> From: Kasper Daniel Hansen
> Sent: 30 November 2016 16:26:10
> To: Rodriguez Martinez, Andrea
> Cc: Vincent Carey; bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] problems installing cran dependencies with BioC
> devel in mac
>
> You are not set up to c
b = lib, ...) :
installation of package �car� had non-zero exit status
Thanks very much,
Andrea
____________
From: Kasper Daniel Hansen
mailto:kasperdanielhan...@gmail.com>>
Sent: 30 November 2016 13:51:05
To: Rodriguez Martinez, Andrea
Cc: Vincent Carey; bioc-devel@r-proj
= doing, lib = lib, ...) :
> installation of package ‘irlba’ had non-zero exit status
> 5: In install.packages(pkgs = doing, lib = lib, ...) :
> installation of package ‘lme4’ had non-zero exit status
> 6: In install.packages(pkgs = doing, lib = lib, ...) :
> installation of pack
9: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package �car� had non-zero exit status
Thanks very much,
Andrea
From: Kasper Daniel Hansen
Sent: 30 November 2016 13:51:05
To: Rodriguez Martinez, Andrea
Cc: Vincent Carey; bioc-devel@r-project.
amespace (and not attached):
> [1] tools_3.4.0
>
>
>
> Thanks very much in advance,
>
>
> Best wishes,
>
>
> Andrea
>
>
> From: Vincent Carey
> Sent: 30 November 2016 12:39:12
> To: Rodriguez Martinez, Andrea
> Cc:
From: Vincent Carey
Sent: 30 November 2016 12:39:12
To: Rodriguez Martinez, Andrea
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] problems installing cran dependencies with BioC devel
in mac
In fact there was a problem installing igraph from source, but that is another
issue. Tha
In fact there was a problem installing igraph from source, but that is
another issue. That can
be resolved using the precompiled binary at http://igraph.org/r/#downloads
> sessionInfo()
R Under development (unstable) (2016-10-26 r71594)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running unde
sessionInfo()? I just did biocLite("MWASTools") with a devel version of
R/BiocInstaller,
and it seems to work well.
On Wed, Nov 30, 2016 at 6:04 AM, Rodriguez Martinez, Andrea <
andrea.rodriguez-martine...@imperial.ac.uk> wrote:
> Hi,
>
>
> I'm trying to install my MWASTools package (devel branc
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