Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Morgan, Martin
devel] mapIds methods for ExpressionSet and SummarizedExperiment Dear Martin, I finally found the time to make the code available via GitHub: https://github.com/lgeistlinger/MapIds and added you as a collaborator. This is currently just a quick put-together for you to get an impression. N

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Ludwig Geistlinger
Dear Martin, I finally found the time to make the code available via GitHub: https://github.com/lgeistlinger/MapIds and added you as a collaborator. This is currently just a quick put-together for you to get an impression. NA and duplicated mappings currently need to be removed to ensure uniquen

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-21 Thread Ludwig Geistlinger
Dear Martin, Ok, I am tyding that up and provide that via GitHub for you. BTW, these ranges to Ids and vice versa sounds very cool! > The original intention of the annotation() slot in ExpressionSet was to > include the microarray chip identifier, so that one references this when > translating fr

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-18 Thread Morgan, Martin
, December 18, 2015 1:15 PM To: Ludwig Geistlinger; bioc-devel@r-project.org Subject: Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment Hi Ludwig -- It would be really great to see what you've put together; can you make your code available somewhere, mayb

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-18 Thread Morgan, Martin
Hi Ludwig -- It would be really great to see what you've put together; can you make your code available somewhere, maybe via github? I think the facilities already in Bioconductor include: - select() and the OrganismDb (e.g., Homo.sapiens) packages - (Recently introduced, in bioc-devel) Genomi