Re: [Bioc-devel] loadDb Arguments Mismatch

2013-01-22 Thread Marc Carlson
That makes sense since this metadata table is the very 1st thing that will be looked at when R wants to make an object. So when you have a bad .sqlite file and that table is missing or unreadable this is also the error you will see. Marc On 01/20/2013 07:59 PM, Dario Strbenac wrote: It

Re: [Bioc-devel] loadDb Arguments Mismatch

2013-01-20 Thread Dario Strbenac
It turns out that the file wasn't properly copied to where it was being read from. After copying again, and making sure the file size was correct, the commands work. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-de

Re: [Bioc-devel] loadDb Arguments Mismatch

2013-01-18 Thread Marc Carlson
Hi Dario, This kind of error probably means that whatever is in your transcriptsHs19.db database is missing a metadata table with appropriate fields filled out. In particular, there needs to be a field (in metadata) to define the "Db type" and also one to define the "Supporting package". Th