Re: [Bioc-devel] docker build failure when installing dependencies

2021-03-09 Thread Reto Gerber via Bioc-devel
I see, so it seems to be an issue of build failures of packages and not of docker itself. Thanks again for the help! Best, Reto ‐‐‐ Original Message ‐‐‐ On Tuesday, March 9, 2021 6:18 PM, Vincent Carey wrote: > note that diffcyt does not currently build at > https://bioconductor.org/c

Re: [Bioc-devel] docker build failure when installing dependencies

2021-03-09 Thread Vincent Carey
note that diffcyt does not currently build at https://bioconductor.org/checkResults/3.13/bioc-LATEST/ -- its errors need to be repaired for your build to succeed On Tue, Mar 9, 2021 at 11:07 AM Reto Gerber via Bioc-devel < bioc-devel@r-project.org> wrote: > Dear all, > > I would like to reprodu

Re: [Bioc-devel] docker build failure when installing dependencies

2021-03-09 Thread Nitesh Turaga
Hi, There are a few things here, 1. You don't have to install BiocManager again, it's pre-installed in the docker image we provide 'bioconductor_docker'. 2. You also don't need to use install2.r script, just list all the packages you need in the BiocManager::install command. 3. I don't unde