Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-05-04 Thread Shepherd, Lori
rk 14263 From: Charles Warden Sent: Monday, May 4, 2020 12:04 PM To: Herv�� Pag��s ; Shepherd, Lori ; 'bioc-devel@r-project.org' Subject: RE: [Bioc-devel] Windows Development Build Error Message for COHCAP Hi Everybody, It looks like the error is now fi

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-05-04 Thread Charles Warden
ge. > > Thank You, > Charles > > -Original Message- > From: Hervé Pagès > Sent: Tuesday, April 28, 2020 10:32 AM > To: Charles Warden ; Shepherd, Lori > ; 'bioc-devel@r-project.org' > > Subject: Re: [Bioc-devel] Windows Development Build Error Messa

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-28 Thread Hervé Pagès
harles Warden ; Shepherd, Lori ; 'bioc-devel@r-project.org' Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP Hi Charles, The error you get on Windows is because your Perl script integrate_island.pl fails on this platform. It contains the following code: if (($os

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-28 Thread Charles Warden
Tuesday, April 28, 2020 10:32 AM To: Charles Warden ; Shepherd, Lori ; 'bioc-devel@r-project.org' Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP Hi Charles, The error you get on Windows is because your Perl script integrate_island.pl fails on this

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-28 Thread Hervé Pagès
Y&s=9TOVgc79RcLRStlZDJLBYL-wmdRF4rBN6aWrEGgHdGQ&e=> So, if I understand everything, I think this is OK. Thanks Again, Charles *From:*Shepherd, Lori *Sent:* Tuesday, April 28, 2020 5:29 AM *To:* Charles Warden ; Hervé Pagès ; 'bioc-devel@r-project.org' *Subject:* Re:

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-28 Thread Charles Warden
Warden ; Hervé Pagès ; 'bioc-devel@r-project.org' Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP I can investigate more on the windows machine after we are done with the release (later this week -- possibly early next) I would highly recommend not rev

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-28 Thread Shepherd, Lori
lled package keeps a record of temporary installation path * DONE (COHCAP) The downloaded source packages are in ��C:\Users\Charles\AppData\Local\Temp\Rtmp88lsk0\downloaded_packages�� Installation path not writeable, unable to update packages: boot, class, foreign, KernSmooth, M

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-27 Thread Charles Warden
ONE (COHCAP) The downloaded source packages are in ‘C:\Users\Charles\AppData\Local\Temp\Rtmp88lsk0\downloaded_packages’ Installation path not writeable, unable to update packages: boot, class, foreign, KernSmooth, MASS, nnet, spatial I

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-23 Thread Charles Warden
12:23 PM To: Charles Warden ; Shepherd, Lori ; 'bioc-devel@r-project.org' Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP [Attention: This email came from an external source. Do not open attachments or click on links from unknown senders or unexpec

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-23 Thread Hervé Pagès
Hi Charles, On 4/23/20 10:19, Charles Warden wrote: My guess was that creating the temporary file in the working directory instead of another folder might help. FWIW here are 2 important reasons for writing temporary stuff to tempdir() instead of the current working directory: 1. tempdir(

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-23 Thread Charles Warden
Hi Lori, Thank you very much. Yes - I understand that there is an upcoming deadline. If I install the version of R for Windows that you provided and I install Rtools from the following link (https://cran.r-project.org/bin/windows/Rtools/), then I can still successfully install the devel versi

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-23 Thread Shepherd, Lori
Buffalo, New York 14263 From: Bioc-devel on behalf of Shepherd, Lori Sent: Thursday, April 23, 2020 8:00 AM To: Charles Warden ; 'bioc-devel@r-project.org' Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP Thank you f

Re: [Bioc-devel] Windows Development Build Error Message for COHCAP

2020-04-23 Thread Shepherd, Lori
Thank you for your inquiry R 4.0.0 can be downloaed from the following page. This patched page exists a few weeks out from the official R release for the patched version of R windows: https://cran.r-project.org/bin/windows/base/rpatched.html 2. Landing pages can have different versions of th