Re: [Bioc-devel] Vignette building fails

2016-01-28 Thread Dan Tenenbaum
Also be sure you are using a recent version of R-devel. Dan - Original Message - > From: "Paul Grosu" > To: "Fan, Jean" > Cc: "bioc-devel" > Sent: Thursday, January 28, 2016 7:49:09 AM > Subject: Re: [Bioc-devel] Vignette building fai

Re: [Bioc-devel] Vignette building fails

2016-01-28 Thread Paul Grosu
Hi Jean, I think you might need to update the required packages, so that they install if you don't have them installed. The test I usually run is by keeping clean R installations and testing packages fresh as if I am a user who just downloaded R. You seem to need org.Hs.eg.db and GO.db for the v

Re: [Bioc-devel] Vignette building fails

2016-01-28 Thread Fan, Jean
Hi Martin, Ah, I didn’t realize the problems were connected. Yes, the vignettes do take quite a while to run. I’ll see what I can do. Thanks for the help. Best, Jean > On Jan 28, 2016, at 9:28 AM, Morgan, Martin > wrote: > > I tried to build your vignettes on my own computer, but they are ta

Re: [Bioc-devel] Vignette building fails

2016-01-28 Thread Morgan, Martin
I tried to build your vignettes on my own computer, but they are taking too long. From http://bioconductor.org/developers/package-guidelines/#correctness the time limit for checking a package (which includes running the vignette code, though not building the vignette) is 5 minutes. Do your vi