Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-20 Thread Martin Morgan
WIW here are all the packages that are victim of this installed.packages bug in today's build report: alpine fCI GenomicFeatures QuasR We only see this error on tokay2 (Windows). H. On 04/11/2017 04:21 PM, Gordon K Smyth wrote: I restarted my PC this morning and the problem disappear

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-20 Thread Michael Stadler
appreciated, >> Michael >> >> >> >> On 17.04.2017 02:08, Hervé Pagès wrote: >>> FWIW here are all the packages that are victim of this >>> installed.packages bug in today's build report: >>> >>> alpine >>> fCI >>>

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Hervé Pagès
martin.mor...@roswellpark.org] Sent: Tuesday, 11 April 2017 7:20 PM To: Gordon K Smyth ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Hervé Pagès
Hi Michael, On 04/17/2017 12:31 PM, Michael Love wrote: alpine, which had this error as of Sunday, is now cleared (I didn't make any changes to the code) https://urldefense.proofpoint.com/v2/url?u=http-3A__master.bioconductor.org_checkResults_devel_bioc-2DLATEST_alpine_&d=DwIBaQ&c=eRAMFD45gAfqt

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Michael Stadler
>> Michael >> >> >> >> On 17.04.2017 02:08, Hervé Pagès wrote: >>> FWIW here are all the packages that are victim of this >>> installed.packages bug in today's build report: >>> >>> alpine >>> fCI >>> GenomicFeature

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Martin Morgan
my PC this morning and the problem disappeared. I probably should have tried that last night, but it was late ... Thanks Gordon -Original Message- From: Martin Morgan [mailto:martin.mor...@roswellpark.org] Sent: Tuesday, 11 April 2017 7:20 PM To: Gordon K Smyth ; bioc-devel@r-project.

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Michael Stadler
t;> >>> -Original Message- >>> From: Martin Morgan [mailto:martin.mor...@roswellpark.org] >>> Sent: Tuesday, 11 April 2017 7:20 PM >>> To: Gordon K Smyth ; bioc-devel@r-project.org >>> Subject: Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 be

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-17 Thread Michael Love
alpine, which had this error as of Sunday, is now cleared (I didn't make any changes to the code) http://master.bioconductor.org/checkResults/devel/bioc-LATEST/alpine/ ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-16 Thread Hervé Pagès
Using BiocInstaller with R 3.4.0 beta On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error me

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Gordon K Smyth
rdon K Smyth ; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta > > On 04/11/2017 05:01 AM, Gordon K Smyth wrote: > > The problem appears to be with installed.packages(). If I start a fresh R > 3.4.0beta session, then I can run installe

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Martin Morgan
On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error message: installed.packages() Error in if (fi

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Gordon K Smyth
The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error message: > installed.packages() Error in if (file.exists(dest) && file.mtime(dest) > file.mtime